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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS04995 [old locus tag: NWMN_0893 ]
  • pan locus tag?: SAUPAN003205000
  • symbol: NWMN_RS04995
  • pan gene symbol?: ktrD
  • synonym:
  • product: Ktr system potassium uptake protein D

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS04995 [old locus tag: NWMN_0893 ]
  • symbol: NWMN_RS04995
  • product: Ktr system potassium uptake protein D
  • replicon: chromosome
  • strand: +
  • coordinates: 992219..993577
  • length: 1359
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (992219..993577) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    GTGTCAATTTTTAGCCAGTTTTTAAAAAGATCAAGCCCTCAACAAGGTATTGTATTGTAC
    TATATCGTCGCAATTGTCATTGCATTTTTATTATTAAACTTACCGTATGTTCATAAACCA
    GGTGTAGAAGTAAATCCAATTGACACATTATTTGTTGCCGTATCCGGAATTAGTGTTACT
    GGATTGTCTCCGATAAGTATTGTCGATACCTATTCTACATTTGGACAATTAATTATCCTC
    GTGATATTAAATATTGGTGGAATTGGCGTCATGGCAATTGGTACGATGTTATGGGTGGTA
    CTAGGTAAACATATTGGAATTAGAGAACGTCAGTTAATTATGTTAGATAATAACAAAAAC
    ACAATGAGTGGTACCGTCAAATTGATTATTGATATTGTAAAATCAATATTTGTAATCGAA
    CTCGTAGGAGCCATGTTATTAGCATTTTACTTTTATCGAGATAATCCAGATTTAAAATAT
    GCAATCATGCAAGGTGTTTTTGTTTCTATTTCTGCCACTACCAATGGTGGATTAGATATT
    ACAGGTAAGTCATTAATTCCTTATGCACATGATTATTTTGTACAAGCGATAGTTATATTT
    TTAATAATTTTAGGATCAATCGGCTTCCCAGTATTATTAGAAGTTAAAGCTTATATTCAA
    AATAGGGTTACTAATTTTAGATTTTCATTATTTACTAAAATTACGACATCAACATATTTA
    TTCCTATTTATTGTTGGGGTATTAGCCATTCTATTATTTGAACATAACCATGCGTTCAAA
    GGTTTAAGTTGGCATCAATCGTTATTCTATTCGCTGTTTCAATCAGCGACTACAAGAAGT
    GCGGGTCTTCAAACAATTGATGTGACAACACTAAGTGACCCCACTAATATTATCATGGGT
    ATTTTAATGTTTATAGGATCTTCGCCAAGTTCGGTTGGTGGCGGTATTCGTACAACAACT
    TTCGCTATTTTAATTTTGTTTTTAATTAACTTTAGTAATAATGCCGATAAAACATCCATT
    AAAGTTTACAATAGAGAAGTACACATTATGGATATTCAACGTTCATTTGCAGTATTTACA
    ATGGCGACAATTTTAACATTTTTAGGAATGCTAATTATATCAGCTACTGAAAATGGTAAG
    CTTACATTTTTACAAGTATTTTTTGAAGTCATGTCTGCATTTGGAACTTGTGGACTATCG
    CTTGGTGTCACAAGTGATATTAGTGATATTTCTAAGGTCGTACTAATGATACTCATGTTT
    ATAGGACGTGTTGGCTTAATATCATTTATCATTATGATAGCAGGACGTCGAGAACCAGAT
    AAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAA
    60
    120
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    960
    1020
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    1140
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    1260
    1320
    1359

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS04995 [old locus tag: NWMN_0893 ]
  • symbol: NWMN_RS04995
  • description: Ktr system potassium uptake protein D
  • length: 452
  • theoretical pI: 9.57365
  • theoretical MW: 49922.9
  • GRAVY: 0.756416

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundspotassium uptake protein, TrkH family (TIGR00933; HMM-score: 286.5)
    MetabolismTransport and binding proteinsCations and iron carrying compoundspotassium uptake protein, Trk family (TIGR00934; HMM-score: 81.5)
  • TheSEED:
  • PFAM:
    Ion_channel (CL0030) TrkH; Cation transport protein (PF02386; HMM-score: 214)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.142
    • Ymax_pos: 42
    • Cmax: 0.127
    • Cmax_pos: 68
    • Smax: 0.266
    • Smax_pos: 35
    • Smean: 0.127
    • D: 0.136
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

  • GI: 445944009 NCBI
  • RefSeq: WP_000021864 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MSIFSQFLKRSSPQQGIVLYYIVAIVIAFLLLNLPYVHKPGVEVNPIDTLFVAVSGISVTGLSPISIVDTYSTFGQLIILVILNIGGIGVMAIGTMLWVVLGKHIGIRERQLIMLDNNKNTMSGTVKLIIDIVKSIFVIELVGAMLLAFYFYRDNPDLKYAIMQGVFVSISATTNGGLDITGKSLIPYAHDYFVQAIVIFLIILGSIGFPVLLEVKAYIQNRVTNFRFSLFTKITTSTYLFLFIVGVLAILLFEHNHAFKGLSWHQSLFYSLFQSATTRSAGLQTIDVTTLSDPTNIIMGILMFIGSSPSSVGGGIRTTTFAILILFLINFSNNADKTSIKVYNREVHIMDIQRSFAVFTMATILTFLGMLIISATENGKLTFLQVFFEVMSAFGTCGLSLGVTSDISDISKVVLMILMFIGRVGLISFIIMIAGRREPDKFHYPKERIQIG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS04995 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]