From AureoWiki
Jump to: navigation, search
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11290 [old locus tag: NWMN_1957 ]
  • pan locus tag?: SAUPAN005299000
  • symbol: NWMN_RS11290
  • pan gene symbol?: rimI
  • synonym:
  • product: ribosomal-protein-alanine N-acetyltransferase RimI

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS11290 [old locus tag: NWMN_1957 ]
  • symbol: NWMN_RS11290
  • product: ribosomal-protein-alanine N-acetyltransferase RimI
  • replicon: chromosome
  • strand: -
  • coordinates: 2167400..2167810
  • length: 411
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (2167400..2167810) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    GTGCCACAAGTCTTTGATCTTGAGCGTCGGAGTTTCAATGACAGTTCTTGGACAATTGAC
    GCATTTTATCATGAAATAGAGCAAAATAACTTTGCGAAATATTTTGTCTTAGAATTTGAA
    CAACAAATTATTGGTTATTTAGGTTTATGGATTGTTATCGATCAAGCTCAAATTACAACA
    GTTGCAATCGATGATAATTATAGAGGCTATGGTTTAGGTCAAATGCTTTTAAAATACGGA
    ATAAACTATGCAAGTCACACTTGTGATGTGATGAGTTTAGAAGTAAGAGTTAATAATAAA
    GTGGCACAACATGTATATGAAAATTTAGGATTTCAATATGGTGGTAAACGTAAAAATTAT
    TATGGTGAAGGTGAGGACGCAATGGTTATGTGGGTGAATTTAAATGACTAA
    60
    120
    180
    240
    300
    360
    411

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS11290 [old locus tag: NWMN_1957 ]
  • symbol: NWMN_RS11290
  • description: ribosomal-protein-alanine N-acetyltransferase RimI
  • length: 136
  • theoretical pI: 4.43259
  • theoretical MW: 15902.7
  • GRAVY: -0.334559

Function[edit source | edit]

  • reaction:
    EC 2.3.1.128?  ExPASy
    Ribosomal-protein-alanine N-acetyltransferaseAcetyl-CoA + ribosomal-protein L-alanine = CoA + ribosomal-protein N-acetyl-L-alanine
  • TIGRFAM:
    Genetic information processingProtein synthesisRibosomal proteins: synthesis and modificationribosomal-protein-alanine acetyltransferase (TIGR01575; EC 2.3.1.128; HMM-score: 117)
    UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase (TIGR03585; EC 2.3.1.202; HMM-score: 33.1)
    MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersGlutathione and analogsmycothiol synthase (TIGR03448; EC 2.3.1.189; HMM-score: 30.6)
    GNAT-family acetyltransferase TIGR03103 (TIGR03103; HMM-score: 16.3)
  • TheSEED:
  • PFAM:
    Acetyltrans (CL0257) Acetyltransf_1; Acetyltransferase (GNAT) family (PF00583; HMM-score: 59.8)
    Acetyltransf_10; Acetyltransferase (GNAT) domain (PF13673; HMM-score: 48.8)
    Acetyltransf_7; Acetyltransferase (GNAT) domain (PF13508; HMM-score: 48.6)
    Acetyltransf_4; Acetyltransferase (GNAT) domain (PF13420; HMM-score: 27.4)
    FR47; FR47-like protein (PF08445; HMM-score: 26)
    Acetyltransf_3; Acetyltransferase (GNAT) domain (PF13302; HMM-score: 21.3)
    Acetyltransf_8; Acetyltransferase (GNAT) domain (PF13523; HMM-score: 14.5)
    Acetyltransf_CG; GCN5-related N-acetyl-transferase (PF14542; HMM-score: 13.9)
    Acetyltransf_9; Acetyltransferase (GNAT) domain (PF13527; HMM-score: 13.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.091
    • Ymax_pos: 65
    • Cmax: 0.118
    • Cmax_pos: 57
    • Smax: 0.118
    • Smax_pos: 2
    • Smean: 0.061
    • D: 0.08
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_011447043 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MPQVFDLERRSFNDSSWTIDAFYHEIEQNNFAKYFVLEFEQQIIGYLGLWIVIDQAQITTVAIDDNYRGYGLGQMLLKYGINYASHTCDVMSLEVRVNNKVAQHVYENLGFQYGGKRKNYYGEGEDAMVMWVNLND

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS11290 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]