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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0231 [new locus tag: SA_RS01355 ]
  • pan locus tag?: SAUPAN001105000
  • symbol: SA0231
  • pan gene symbol?: hmp
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0231 [new locus tag: SA_RS01355 ]
  • symbol: SA0231
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 279613..280758
  • length: 1146
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGCTTACAGAACAAGAGAAAGACATTATCAAACAAACGGTGCCTTTACTTAAAGAGAAA
    GGGACAGAAATTACGTCAATCTTTTATCCAAAAATGTTTAAAGCGCATCCTGAACTTTTA
    AACATGTTTAATCAAACGAACCAAAAACGAGGCATGCAATCTTCAGCATTAGCACAAGCT
    GTAATGGCCGCTGCGGTTAATATCGATAACTTAAGTGTTATTAAACCAGTCATTATGCCA
    GTCGCATATAAACACTGTGCATTACAAGTTTATGCTGAACATTATCCAATTGTGGGGGAA
    AATTTATTAAAAGCAATCCAAGACGTGACAGGTTTAGAAGAACATGACCCTGTGATTCAA
    GCTTGGGCAAAAGCATATGGTGTTATTGCGGATGTGTTCATCCAAATTGAAAAAGAAATT
    TATGATCAAATGATGTGGATTGGTTTTAAACCATTCAAAATTACCAATATTAAACAAGAA
    TCTGAAGACATTAAATCATTTACAGTTGAAACTGAAGAATATGACTTTAGTGAATTTACA
    CCAGGCCAATACATCACAGTTGATGTTTCTAGTGATAAACTTCCATATAGAGCTAAACGT
    CACTATTCTATCGTATCAGGTGAAAAAAACCATTTAACTTTTGGCGTTAAACGTGATGTC
    ACAACAGAACATGAAGGCGAAGTTTCAACAATTTTACACGATGAGATTAAAGAAGGCGAT
    ATGATTAATTTAGCTGCGCCTGTAGGTGGATTCGTATTAGAGAATACGACTGAACCACAA
    CTTTTCTTAGGTTCAGGTATTGGCGTCACACCTTTAGTAGCAATGTATGAAGCTGCCTCT
    GCCAAAGGTTTAGATACACAGATGGTTCAAGTTGCTGAAAATGAACAACATTTACCTTTC
    AAAGACAACTTCAACAGTATCGCAAGCCATTATGACAACGCTAAATTATATACACACTTA
    AAAGATAAACAAGGCTATATTGGCACTGAAGAATTACAAGCATTTTTAGCAAATAAACCT
    GAAATTTATATCTGTGGTGGTACAAAATTCTTACAATCTATGATCGAAGCACTTAAATCT
    TTAAATTACGATATGGATCGCGTACACTACGAAACATTTATTCCAAGACTAAGCGTTGCA
    GTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1146

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0231 [new locus tag: SA_RS01355 ]
  • symbol: SA0231
  • description: hypothetical protein
  • length: 381
  • theoretical pI: 4.97909
  • theoretical MW: 42958.8
  • GRAVY: -0.218898

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismEnergy metabolismOtherphenylacetate-CoA oxygenase/reductase, PaaK subunit (TIGR02160; HMM-score: 56.5)
    MetabolismTransport and binding proteinsCations and iron carrying compoundsNADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit (TIGR01941; EC 1.6.5.-; HMM-score: 27.3)
  • TheSEED:  
    Bacterial hemoglobins Flavohemoglobin / Nitric oxide dioxygenase (EC 1.14.12.17) 
    Flavohaemoglobin Flavohemoglobin / Nitric oxide dioxygenase (EC 1.14.12.17) 
    Glutaredoxins Flavohemoglobin / Nitric oxide dioxygenase (EC 1.14.12.17) 
  • PFAM:
    FAD_Lum_binding (CL0076) FAD_binding_6; Oxidoreductase FAD-binding domain (PF00970; HMM-score: 37.3)
    Globin (CL0090) Globin; Globin (PF00042; HMM-score: 32.3)
    NAD_Ferredoxin (CL0091) NAD_binding_1; Oxidoreductase NAD-binding domain (PF00175; HMM-score: 23.4)
    no clan definedDUF2691; Protein of unknown function (DUF2691) (PF10903; HMM-score: 12.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.138
    • Ymax_pos: 36
    • Cmax: 0.168
    • Cmax_pos: 36
    • Smax: 0.195
    • Smax_pos: 52
    • Smean: 0.113
    • D: 0.128
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MLTEQEKDIIKQTVPLLKEKGTEITSIFYPKMFKAHPELLNMFNQTNQKRGMQSSALAQAVMAAAVNIDNLSVIKPVIMPVAYKHCALQVYAEHYPIVGENLLKAIQDVTGLEEHDPVIQAWAKAYGVIADVFIQIEKEIYDQMMWIGFKPFKITNIKQESEDIKSFTVETEEYDFSEFTPGQYITVDVSSDKLPYRAKRHYSIVSGEKNHLTFGVKRDVTTEHEGEVSTILHDEIKEGDMINLAAPVGGFVLENTTEPQLFLGSGIGVTPLVAMYEAASAKGLDTQMVQVAENEQHLPFKDNFNSIASHYDNAKLYTHLKDKQGYIGTEELQAFLANKPEIYICGGTKFLQSMIEALKSLNYDMDRVHYETFIPRLSVAV

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: SA1851 (Rex*)
    Rex* (TF) important in Energy metabolismRegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]