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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0530 [new locus tag: SA_RS03080 ]
  • pan locus tag?: SAUPAN002349000
  • symbol: SA0530
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0530 [new locus tag: SA_RS03080 ]
  • symbol: SA0530
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 624247..624894
  • length: 648
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    TTGAAGTTTGACAATTATATTTTTGATTTTGATGGTACGTTGGCAGACACGAAAAAATGT
    GGTGAAGTAGCAACACAAAGTGCATTTAAAGCATGTGGCTTAACGGAACCATCATCTAAA
    GAAATAACGCATTATATGGGAATACCTATTGAAGAATCATTTTTAAAATTAGCAGACCGA
    CCATTAGATGAAGCAGCATTAGCAAAGTTAATCGATACATTTAGACATACATATCAATCT
    ATTGAAAAGGACTATATTTATGAATTTGCGGGTATAACTGAAGCCATTACAAGTTTGTAT
    AACCAAGGGAAAAAACTTTTCGTGGTGTCTAGTAAGAAGAGTGATGTATTAGAAAGAAAT
    TTATCGGCTATTGGATTAAATCACTTGATTACCGAAGCTGTTGGATCCGATCAAGTAAGT
    GCATATAAACCAAATCCTGAAGGCATACACACAATTGTGCAACGCTACAATTTAAATAGC
    CAACAAACGGTTTATATTGGTGATTCAACATTTGATGTTGAGATGGCGCAACATGCTGGT
    GTACCATCTGCAGCAGTAACATGGGGAGCACATGATGCAAGGTCATTACTTCATTCAAAT
    CCAGATTTTATAATCAATGATCCATCAGAAATTAATACAGTATTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    648

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0530 [new locus tag: SA_RS03080 ]
  • symbol: SA0530
  • description: hypothetical protein
  • length: 215
  • theoretical pI: 4.79139
  • theoretical MW: 23784.5
  • GRAVY: -0.236279

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismEnergy metabolismSugarsphosphoglycolate phosphatase, bacterial (TIGR01449; EC 3.1.3.18; HMM-score: 95.4)
    AHBA synthesis associated protein (TIGR01454; HMM-score: 79.7)
    phosphonatase-like hydrolase (TIGR03351; HMM-score: 64.5)
    HAD hydrolase, TIGR02253 family (TIGR02253; HMM-score: 64.3)
    beta-phosphoglucomutase family hydrolase (TIGR02009; HMM-score: 53.4)
    Unknown functionEnzymes of unknown specificityHAD hydrolase, family IIIA (TIGR01662; HMM-score: 48.4)
    HAD hydrolase, REG-2-like, family IA (TIGR02252; HMM-score: 45.4)
    Unknown functionEnzymes of unknown specificityHAD hydrolase, family IA, variant 1 (TIGR01549; HMM-score: 44.2)
    haloacid dehalogenase, type II (TIGR01428; EC 3.8.1.2; HMM-score: 42.3)
    MetabolismEnergy metabolismBiosynthesis and degradation of polysaccharidesbeta-phosphoglucomutase (TIGR01990; EC 5.4.2.6; HMM-score: 38.7)
    noncanonical pyrimidine nucleotidase, YjjG family (TIGR02254; EC 3.1.3.5; HMM-score: 37.4)
    HAD hydrolase, TIGR01548 family (TIGR01548; HMM-score: 32.9)
    MetabolismCentral intermediary metabolismOtherphosphonoacetaldehyde hydrolase (TIGR01422; EC 3.11.1.1; HMM-score: 29.9)
    MetabolismAmino acid biosynthesisSerine familyphosphoserine phosphatase SerB (TIGR00338; EC 3.1.3.3; HMM-score: 28.9)
    Unknown functionEnzymes of unknown specificityCof-like hydrolase (TIGR00099; HMM-score: 28.4)
    Unknown functionEnzymes of unknown specificityHAD hydrolase, family IA, variant 3 (TIGR01509; HMM-score: 28.3)
    histidinol-phosphate phosphatase domain (TIGR01656; HMM-score: 28.1)
    Cell structureCell envelopeBiosynthesis and degradation of surface polysaccharides and lipopolysaccharides3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (TIGR01670; EC 3.1.3.45; HMM-score: 26.9)
    HAD phosphatase, family IIIC (TIGR01681; HMM-score: 25.2)
    Unknown functionEnzymes of unknown specificityHAD phosphoserine phosphatase-like hydrolase, family IB (TIGR01488; HMM-score: 23.3)
    Unknown functionEnzymes of unknown specificityHAD hydrolase, family IIB (TIGR01484; HMM-score: 22.8)
    Unknown functionEnzymes of unknown specificityHAD hydrolase, family IB (TIGR01490; HMM-score: 20.7)
    pyrimidine 5'-nucleotidase (TIGR01993; EC 3.1.3.5; HMM-score: 19.3)
    HAD phosphatase, family IIIA (TIGR01668; EC 3.1.3.-; HMM-score: 18.9)
    FkbH domain (TIGR01686; HMM-score: 18.8)
    phosphoglycolate/pyridoxal phosphate phosphatase family (TIGR01452; EC 3.1.3.18; HMM-score: 18.7)
    phosphoglycolate phosphatase, TA0175-type (TIGR01487; EC 3.1.3.18; HMM-score: 18.5)
    DNA 3'-phosphatase (TIGR01664; EC 3.1.3.32; HMM-score: 18.2)
    MetabolismCentral intermediary metabolismOther2,3-diketo-5-methylthio-1-phosphopentane phosphatase (TIGR01489; HMM-score: 17)
    phosphoserine phosphatase-like hydrolase, archaeal (TIGR01491; HMM-score: 15.5)
    Unknown functionEnzymes of unknown specificityHAD hydrolase, TIGR01457 family (TIGR01457; HMM-score: 14.5)
    Unknown functionEnzymes of unknown specificityHAD hydrolase, family IIA (TIGR01460; HMM-score: 14.1)
    HAD hydrolase, family IA, variant 2 (TIGR01493; HMM-score: 13.1)
    sucrose-phosphate phosphatase subfamily (TIGR01482; EC 3.1.3.-; HMM-score: 12.3)
    MetabolismAmino acid biosynthesisHistidine familyhistidinol-phosphatase (TIGR01261; EC 3.1.3.15; HMM-score: 12.1)
    epoxide hydrolase N-terminal domain-like phosphatase (TIGR02247; HMM-score: 11.9)
  • TheSEED:  
    CarbohydratesCentral carbohydrate metabolismGlycolate, glyoxylate interconversions Phosphoglycolate phosphatase (EC 3.1.3.18) 
    DNA MetabolismDNA repair2-phosphoglycolate salvage Phosphoglycolate phosphatase (EC 3.1.3.18) 
  • PFAM:
    HAD (CL0137) HAD_2; haloacid dehalogenase-like hydrolase (PF13419; HMM-score: 150.7)
    Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 51)
    Hydrolase_like; HAD-hyrolase-like (PF13242; HMM-score: 45.4)
    HAD; haloacid dehalogenase-like hydrolase (PF12710; HMM-score: 37.9)
    Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 30)
    PNK3P; Polynucleotide kinase 3 phosphatase (PF08645; HMM-score: 15)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.12
    • Ymax_pos: 32
    • Cmax: 0.116
    • Cmax_pos: 41
    • Smax: 0.154
    • Smax_pos: 23
    • Smean: 0.096
    • D: 0.111
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKFDNYIFDFDGTLADTKKCGEVATQSAFKACGLTEPSSKEITHYMGIPIEESFLKLADRPLDEAALAKLIDTFRHTYQSIEKDYIYEFAGITEAITSLYNQGKKLFVVSSKKSDVLERNLSAIGLNHLITEAVGSDQVSAYKPNPEGIHTIVQRYNLNSQQTVYIGDSTFDVEMAQHAGVPSAAVTWGAHDARSLLHSNPDFIINDPSEINTVL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]