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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0891 [new locus tag: SA_RS05055 ]
  • pan locus tag?: SAUPAN003237000
  • symbol: SA0891
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0891 [new locus tag: SA_RS05055 ]
  • symbol: SA0891
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1011851..1012810
  • length: 960
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGAATAGGAATATCGTTAAATTAGTTGTGTTTATGCTAATCTTAGTTGTAGCAGTAGCG
    GGTTGTGGTCAAAAAGATACTGAAGAGAAAACTGAAATGACGACAATAAAAGATGAATTA
    GGAACTGAAAAAATTAAGAAAAATCCTAAACGTGTTGTTGTATTAGAATATAGTTTTGCT
    GATTATTTAGCAGCATTAGATATGAAACCTGTTGGTATTGCAGATGATGGCAGCACTAAA
    AATATAACAAAGTCAGTAAGAGATAAGATTGGGGCATATGAATCGGTTGGATCTAGACCG
    CAACCGAATATGGAAGTGATAAGTAAATTAAAACCGGATTTGATCATTGCAGATGTTAGC
    AGACATAAGAAAATCAAATCAGAATTGAGCAAAATTGCTCCGACAATCATGTTAGTTAGC
    GGTACGGGAGATTATAATGCAAATATTGAAGCATTTAAAACAGTCGCTAAAGCAGTAGGC
    AAAGAGAAAGAAGGCGAGAAGCGTCTGGAAAAGCATGATAAAATATTAGCGGAGATTAGA
    AAGAAAATTGAACAGAGTACGTTAAAATCTGCATTTGCATTCGGTATCTCAAGAGCAGGT
    ATGTTTATTAATAATGAAGATACATTTATGGGACAATTCTTAATTAAAATGGGTATTCAA
    CCTGAAGTCACAAAAGACAAAACTACGCATGTTGGTGAACGCAAGGGTGGTCCTTATATA
    TATTTAAATAATGAAGAACTTGCCAATATCAATCCAAAAGTTATGATTTTAGCCACTGAC
    GGAAAAACGGACAAAAATAGAACGAAATTCATTGATCCTGCAGTTTGGAAATCATTAAAA
    GCTGTGAAAGATAACAAAGTTTATGACGTTGACCGAAATAAGTGGTTGAAATCAAGGGGG
    ATTATCGCAAGTGAAAGTATGGCAGAAGATTTAGAAAAAATTGCAGAAAAAGCAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0891 [new locus tag: SA_RS05055 ]
  • symbol: SA0891
  • description: hypothetical protein
  • length: 319
  • theoretical pI: 10.0458
  • theoretical MW: 35566.2
  • GRAVY: -0.410658

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    heme ABC transporter, heme-binding protein isdE (TIGR03659; HMM-score: 92.9)
    putative ABC transporter PGF-CTERM-modified substrate-binding protein (TIGR04281; HMM-score: 30.1)
    MetabolismTransport and binding proteinsAmino acids, peptides and amineslipoprotein, PulS/OutS family (TIGR01004; HMM-score: 11.8)
  • TheSEED:  
    Iron acquisition and metabolismIron acquisition and metabolism - no subcategoryHeme, hemin uptake and utilization systems in GramPositives Heme ABC type transporter HtsABC, heme-binding protein 
    Stress ResponseStress Response - no subcategoryFlavohaemoglobin Heme ABC type transporter HtsABC, heme-binding protein 
  • PFAM:
    Chelatase (CL0043) Peripla_BP_2; Periplasmic binding protein (PF01497; HMM-score: 115.9)
    LppaM (CL0421) LPAM_2; Prokaryotic lipoprotein-attachment site (PF13627; HMM-score: 15.2)
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 14.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.81
    • Cellwall Score: 0.09
    • Extracellular Score: 0.1
    • Internal Helix: 1
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: VAVAGCG
  • SignalP: Signal peptide length 26 aa
    • Ymax: 0.406
    • Ymax_pos: 26
    • Cmax: 0.209
    • Cmax_pos: 26
    • Smax: 0.911
    • Smax_pos: 17
    • Smean: 0.794
    • D: 0.557
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNRNIVKLVVFMLILVVAVAGCGQKDTEEKTEMTTIKDELGTEKIKKNPKRVVVLEYSFADYLAALDMKPVGIADDGSTKNITKSVRDKIGAYESVGSRPQPNMEVISKLKPDLIIADVSRHKKIKSELSKIAPTIMLVSGTGDYNANIEAFKTVAKAVGKEKEGEKRLEKHDKILAEIRKKIEQSTLKSAFAFGISRAGMFINNEDTFMGQFLIKMGIQPEVTKDKTTHVGERKGGPYIYLNNEELANINPKVMILATDGKTDKNRTKFIDPAVWKSLKAVKDNKVYDVDRNKWLKSRGIIASESMAEDLEKIAEKAK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA0891 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]