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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1090 [new locus tag: SA_RS06175 ]
  • pan locus tag?: SAUPAN003539000
  • symbol: lytN
  • pan gene symbol?: lytN
  • synonym:
  • product: LytN protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1090 [new locus tag: SA_RS06175 ]
  • symbol: lytN
  • product: LytN protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1233582..1234700
  • length: 1119
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAATAAACAACAAAGTAAAGTACGCTATTCAATTAGAAAAGTTAGTATTGGAATTTTG
    TCAATTTCAATAGGTATGTTTTTGGCATTGGGTATGTCGAACAAAGCATATGCAGATGAA
    ATTGATAAATCTAAAGATTTTACAAGAGGGTATGAGCAAAATGTATTCGCGAAATCAGAG
    TTAAATGCTAATAAAAATACGACAAAAGACAAAATAAAAAATGAAGGTGCTGTTAAAACA
    TCGGACACAAGTTTAAAGTTAGACAACAAATCAGCAATTTCAAACGGAAATGAAATTAAT
    CAAGATATAAAGATTTCAAATACTCCGAAAAACTCAAGCCAAGGTAACAATCTAGTTATT
    AATAACAATGAACCTACTAAAGAAATTAAAATTGCAAACTTGGAAGCTCAAAATTCTAAT
    CAGAAGAAAACGAATAAAGTTACTAATAATTACTTTGGTTACTACAGTTTTAGAGAAGCT
    CCAAAAACACAAATCTATACTGTAAAAAAAGGAGACACACTTAGTGCTATAGCATTAAAA
    TACAAAACTACAGTTTCAAATATTCAAAATACAAATAATATAGCAAATCCTAATTTAATA
    TTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACA
    GTGTCTTCAAATAATAAAAGTAATAGTAATAGCAGTACATTAAATTATTTGAAAACATTA
    GAGAATAGAGGATGGGATTTCGACGGTAGTTATGGATGGCAATGTTTCGATTTAGTTAAT
    GTATATTGGAATCATCTTTATGGTCATGGATTAAAAGGATATGGAGCTAAAGATATACCA
    TATGCAAATAATTTTAATAGTGAAGCTAAAATTTATCACAACACACCAACTTTCAAAGCT
    GAACCTGGGGACTTAGTGGTTTTTAGTGGAAGATTTGGTGGAGGATATGGTCATACAGCT
    ATTGTCTTAAATGGTGATTATGATGGAAAATTAATGAAGTTCCAAAGTTTAGATCAAAAC
    TGGAATAATGGTGGATGGCGTAAAGCAGAGGTTGCACATAAAGTTGTTCATAATTATGAA
    AATGATATGATTTTTATTAGACCATTTAAAAAAGCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1119

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1090 [new locus tag: SA_RS06175 ]
  • symbol: LytN
  • description: LytN protein
  • length: 372
  • theoretical pI: 10.1016
  • theoretical MW: 41738.7
  • GRAVY: -0.719355

Function[edit source | edit]

  • reaction:
    EC 3.-.-.-?  ExPASy
  • TIGRFAM:
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 40.2)
    Cellular processesCellular processesSporulation and germinationspore coat assembly protein SafA (TIGR02899; HMM-score: 36.6)
    Cellular processesCellular processesSporulation and germinationstage VI sporulation protein D (TIGR02907; HMM-score: 20.2)
  • TheSEED:  
    Putative cell wall hydrolase 
  • PFAM:
    LysM (CL0187) LysM; LysM domain (PF01476; HMM-score: 66.1)
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 46.4)
    no clan definedYSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 20.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.87
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP: Secretory(released) (with CS)
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: -2
    • Predicted Cleavage Site: NKAYADEI
  • SignalP: Signal peptide length 39 aa
    • Ymax: 0.662
    • Ymax_pos: 39
    • Cmax: 0.752
    • Cmax_pos: 39
    • Smax: 0.775
    • Smax_pos: 23
    • Smean: 0.626
    • D: 0.648
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNKQQSKVRYSIRKVSIGILSISIGMFLALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKLDNKSAISNGNEINQDIKISNTPKNSSQGNNLVINNNEPTKEIKIANLEAQNSNQKKTNKVTNNYFGYYSFREAPKTQIYTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKPKTVSSNNKSNSNSSTLNYLKTLENRGWDFDGSYGWQCFDLVNVYWNHLYGHGLKGYGAKDIPYANNFNSEAKIYHNTPTFKAEPGDLVVFSGRFGGGYGHTAIVLNGDYDGKLMKFQSLDQNWNNGGWRKAEVAHKVVHNYENDMIFIRPFKKA

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]