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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01219
  • pan locus tag?: SAUPAN003539000
  • symbol: SAOUHSC_01219
  • pan gene symbol?: lytN
  • synonym:
  • product: cell wall hydrolase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_01219
  • symbol: SAOUHSC_01219
  • product: cell wall hydrolase
  • replicon: chromosome
  • strand: +
  • coordinates: 1169209..1170327
  • length: 1119
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAATAAACAACAAAGTAAAGTACGCTATTCAATTAGAAAAGTTAGTATTGGAATTTTG
    TCAATTTCAATAGGTATGTTTTTGGCATTGGGTATGTCGAACAAAGCATATGCAGATGAA
    ATTGATAAATCTAAAGATTTTACAAGAGGGTATGAGCAAAATGTATTCGCGAAATCAGAG
    TTAAATGCTAATAAAAATACGACAAAAGACAAAATAAAAAATGAAGGTGCTGTTAAAACA
    TCGGACACAAGTTTAAAGTTAGACAACAAATCAGCAATTTCAAACGGAAATGAAATTAAT
    CAAGATATAAAGATTTCAAATACTCCGAAAAACTCAAGCCAAGGTAACAATCTAGTTATT
    AATAACAATGAACTTACTAAAGAAATTAAAATTGCAAACTTGGAAGCTCAAAATTCTAAT
    CAGAAGAAAACGAATAAAGTTACTAATAATTACTTTGGTTACTACAGTTTTAGAGAAGCT
    CCAAAAACACAAATCTATACTGTAAAAAAAGGAGACACACTTAGTGCTATAGCATTAAAA
    TACAAAACTACAGTTTCAAATATTCAAAATACAAATAATATAGCAAATCCTAATTTAATA
    TTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACA
    GTGTCTTCAAATAATAAAAGTAATAGTAATAGCAGTACATTAAATTATTTGAAAACATTA
    GAGAATAGAGGATGGGATTTCGACGGTAGTTATGGATGGCAATGTTTCGATTTAGTTAAT
    GTATATTGGAATCATCTTTATGGTCATGGATTAAAAGGATATGGAGCTAAAGATATACCA
    TATGCAAATAATTTTAATAGTGAAGCTAAAATTTATCACAACACACCAACTTTCAAAGCT
    GAACCTGGGGACTTAGTGGTTTTTAGTGGAAGATTTGGTGGAGGATATGGTCATACAGCT
    ATTGTCTTAAATGGTGATTATGATGGAAAATTAATGAAGTTCCAAAGTTTAGATCAAAAC
    TGGAATAATGGTGGATGGCGTAAAGCAGAGGTTGCACATAAAGTTGTTCATAATTATGAA
    AATGATATGATTTTTATTAGACCATTTAAAAAAGCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1119

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_01219
  • symbol: SAOUHSC_01219
  • description: cell wall hydrolase
  • length: 372
  • theoretical pI: 10.1016
  • theoretical MW: 41754.7
  • GRAVY: -0.704839

Function[edit source | edit]

  • reaction:
    EC 3.-.-.-?  ExPASy
  • TIGRFAM:
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 40.2)
    Cellular processesCellular processesSporulation and germinationspore coat assembly protein SafA (TIGR02899; HMM-score: 36.6)
    Cellular processesCellular processesSporulation and germinationstage VI sporulation protein D (TIGR02907; HMM-score: 20.1)
  • TheSEED:  
    Putative cell wall hydrolase 
  • PFAM:
    LysM (CL0187) LysM; LysM domain (PF01476; HMM-score: 66.1)
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 46.4)
    no clan definedYSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 20.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.87
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP: Secretory(released) (with CS)
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: -2
    • Predicted Cleavage Site: NKAYADEI
  • SignalP: Signal peptide length 39 aa
    • Ymax: 0.662
    • Ymax_pos: 39
    • Cmax: 0.752
    • Cmax_pos: 39
    • Smax: 0.775
    • Smax_pos: 23
    • Smean: 0.626
    • D: 0.648
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNKQQSKVRYSIRKVSIGILSISIGMFLALGMSNKAYADEIDKSKDFTRGYEQNVFAKSELNANKNTTKDKIKNEGAVKTSDTSLKLDNKSAISNGNEINQDIKISNTPKNSSQGNNLVINNNELTKEIKIANLEAQNSNQKKTNKVTNNYFGYYSFREAPKTQIYTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKPKTVSSNNKSNSNSSTLNYLKTLENRGWDFDGSYGWQCFDLVNVYWNHLYGHGLKGYGAKDIPYANNFNSEAKIYHNTPTFKAEPGDLVVFSGRFGGGYGHTAIVLNGDYDGKLMKFQSLDQNWNNGGWRKAEVAHKVVHNYENDMIFIRPFKKA

Experimental data[edit source | edit]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  2. Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  3. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]

S S Ingavale, W Van Wamel, A L Cheung
Characterization of RAT, an autolysis regulator in Staphylococcus aureus.
Mol. Microbiol.: 2003, 48(6);1451-66
[PubMed:12791130] [WorldCat.org] (P p)
M Sugai, T Fujiwara, H Komatsuzawa, SuginakaH
Identification and molecular characterization of a gene homologous to epr (endopeptidase resistance gene) in Staphylococcus aureus.
Gene: 1998, 224(1-2);67-75
[PubMed:9931440] [WorldCat.org] (P p)