From AureoWiki
Jump to: navigation, search

NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1155 [new locus tag: SA_RS06560 ]
  • pan locus tag?: SAUPAN003683000
  • symbol: SA1155
  • pan gene symbol?: cls1
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1155 [new locus tag: SA_RS06560 ]
  • symbol: SA1155
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1315993..1317510
  • length: 1518
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGTTTTTTGTGCCTTTCTTTATAGGAGAAAAGACTATGCGATATACATTTTCAAATGAT
    TTAGGAACACTTTTTACCATTATTTTAGCCATTGGATTCATCATTAATTTAGTATTGGCT
    TTTATTATTATCTTTTTAGAAAGAAATAGACGTACAGCGAGTTCAACTTGGGCATGGCTA
    TTTGTACTTTTTGTCTTACCATTGATTGGTTTTATTCTTTACTTGTTTTTTGGTAGAACC
    GTTTCGGCACGTAAATTGAATAAAAACAATGGTAACGTGTTAACGGATTTCGATGGACTT
    TTAAAACAACAAATAGAAAGCTTTGATAAAGGTAATTATGGTACTGATAACAAACAAGTT
    CAAAAACATCATGATTTAGTAAGTATGCTTTTGATGGATCAAGATGGTTTTTTAACTGAA
    AATAATAAAGTTGATCATTTCATTGATGGAAATGATTTATATGATCAAGTTTTAAAAGAT
    ATTAAAAATGCAAAAGAATATATCCATTTAGAGTACTATACTTTCGCTTTAGATGGTTTA
    GGTAAAAGAATTTTACATGCTTTAGAAGAAAAATTGAAACAAGGTCTAGAAGTAAAAATA
    TTATATGATGATGTTGGATCTAAAAATGTTAAGATGGCAAATTTTGATCACTTTAAATCA
    TTAGGTGGCGAAGTTGAAGCATTTTTTGCTTCTAAATTACCCTTATTAAATTTCCGTATG
    AATAACAGAAATCATAGAAAAATCATCGTAATCGATGGTCAACTAGGTTATGTCGGAGGA
    TTTAACATTGGTGATGAATATCTAGGATTAGGTAAACTAGGGTATTGGAGAGATACGCAT
    TTACGTATACAAGGGGATGCGGTTGATGCACTGCAGTTGCGATTTATTTTAGACTGGAAT
    TCGCAAGCGCACCGTCCACAGTTTGAATATGATGTTAAGTATTTCCCTAAAAAGAACGGA
    CCATTGGGCAATTCACCAATTCAAATAGCTGCAAGTGGCCCAGCTAGTGACTGGCATCAA
    ATTGAATATGGTTATACAAAAATGATTATGAGCGCTAAGAAGTCGGTATATTTGCAATCG
    CCTTATTTCATTCCGGATAACTCATATATAAATGCCATTAAAATTGCAGCTAAATCAGGT
    GTAGATGTTCATCTAATGATTCCATGTAAGCCAGATCATCCTTTAGTTTATTGGGCGACA
    TTTTCAAATGCCTCTGACTTATTATCAAGTGGTGTTAAAATTTATACGTATGAAAATGGA
    TTTATACATTCTAAAATGTGCTTAATTGATGATGAAATCGTATCAGTGGGCACAGCAAAT
    ATGGACTTTAGAAGTTTTGAATTAAATTTTGAAGTAAATGCCTTTGTATATGATGAAAAT
    CTTGCTAAGGATTTAAGGGTGGCTTATGAACATGATATTACAAAATCAAAACAACTAACC
    AAAGAATCATATGCCAATAGACCGCTGTCTGTTAAATTCAAAGAATCGTTAGCAAAATTA
    GTTTCGCCAATTTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1518

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1155 [new locus tag: SA_RS06560 ]
  • symbol: SA1155
  • description: hypothetical protein
  • length: 505
  • theoretical pI: 7.48696
  • theoretical MW: 57757
  • GRAVY: -0.117228

Function[edit source | edit]

  • reaction:
    EC 2.7.8.-?  ExPASy
    2 Phosphatidylglycerol = diphosphatidylglycerol + glycerol?
  • TIGRFAM:
    cardiolipin synthase (TIGR04265; EC 2.7.8.-; HMM-score: 820.5)
  • TheSEED:  
    Fatty Acids, Lipids, and IsoprenoidsPhospholipidsGlycerolipid and Glycerophospholipid Metabolism in Bacteria Cardiolipin synthetase (EC 2.7.8.-) 
  • PFAM:
    PLD (CL0479) PLDc_2; PLD-like domain (PF13091; HMM-score: 145.6)
    PLDc; Phospholipase D Active site motif (PF00614; HMM-score: 51)
    no clan definedPLDc_N; Phospholipase_D-nuclease N-terminal (PF13396; HMM-score: 45.2)
    CopD_like (CL0430) UPF0093; Uncharacterised protein family (UPF0093) (PF03653; HMM-score: 15.8)
    no clan definedPox_A14; Poxvirus virion envelope protein A14 (PF05767; HMM-score: 14.6)
    MFS (CL0015) MFS_Mycoplasma; Mycoplasma MFS transporter (PF07672; HMM-score: 13.2)
    no clan definedDUF3611; Protein of unknown function (DUF3611) (PF12263; HMM-score: 12.9)
    DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 11.6)
    DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 7.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.17
    • Cytoplasmic Membrane Score: 9.51
    • Cellwall Score: 0.16
    • Extracellular Score: 0.15
    • Internal Helices: 2
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.102
    • Ymax_pos: 11
    • Cmax: 0.142
    • Cmax_pos: 54
    • Smax: 0.119
    • Smax_pos: 1
    • Smean: 0.1
    • D: 0.101
  • predicted transmembrane helices (TMHMM): 2

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MFFVPFFIGEKTMRYTFSNDLGTLFTIILAIGFIINLVLAFIIIFLERNRRTASSTWAWLFVLFVLPLIGFILYLFFGRTVSARKLNKNNGNVLTDFDGLLKQQIESFDKGNYGTDNKQVQKHHDLVSMLLMDQDGFLTENNKVDHFIDGNDLYDQVLKDIKNAKEYIHLEYYTFALDGLGKRILHALEEKLKQGLEVKILYDDVGSKNVKMANFDHFKSLGGEVEAFFASKLPLLNFRMNNRNHRKIIVIDGQLGYVGGFNIGDEYLGLGKLGYWRDTHLRIQGDAVDALQLRFILDWNSQAHRPQFEYDVKYFPKKNGPLGNSPIQIAASGPASDWHQIEYGYTKMIMSAKKSVYLQSPYFIPDNSYINAIKIAAKSGVDVHLMIPCKPDHPLVYWATFSNASDLLSSGVKIYTYENGFIHSKMCLIDDEIVSVGTANMDFRSFELNFEVNAFVYDENLAKDLRVAYEHDITKSKQLTKESYANRPLSVKFKESLAKLVSPIL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]