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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1173 [new locus tag: SA_RS06670 ]
  • pan locus tag?: SAUPAN003712000
  • symbol: SA1173
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1173 [new locus tag: SA_RS06670 ]
  • symbol: SA1173
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1335735..1336751
  • length: 1017
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATTAAAAAATTCATAGTAACTGTTGTTGCGTTTTTATCAATTATTATCATTGCGCCAATA
    ACAGAATTTAAACCATTCATTCATTTACAAAATGAAGTAAGACAATATATTGACATTCAC
    ATCAATAAAGAAACAATTTCTGCGGAAAATAAATTGGATACACCGAAGAAACAACAATTT
    GCCTTTAATAATATACAAATGAACATGTCGAAATCAGATGTTGAGAAAACATTAAATAAA
    CCAAAAAGAGTGACATTTAATGAATATGGTACGAAGTGGTATACGTATTATGATGACGAT
    TACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAAT
    CAAAATATAATCACTTCAAAATCAAAAATTAAATACAATACACCTAAATCGGTTGTAAGG
    CAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACAAAAT
    AATAAAGAATATGATGTTTTCCATAAAAATCACATTTATACGACGGTATTTTATGATAAG
    CATCGACGTAATAATGTAACAGCTGTTTTACAAGTAAGTGATGCTATGGAAAATAGATTA
    AAAGAACAATATGGAGCACCTTCGAAATCGCTTGCAGATAGTTTTGAACTACAAAATTTT
    GATTTAGTTAATGCTGAAAGAAAACAACATCAATTATCTACATTGAAGTATTCTAAACAG
    AATTCTGAAACTGCTCGTAAGCATAGTAAAGATATGGCCAAAAATCATTATTTTGATCAT
    ACAAATTTAAAAGGTCAATCACCATTTGATCGATTGAAAAAAGATGGTATTACATTTAAC
    TCAGCCGGAGAGAATTTAGCATATGGTCAAGTTAGTAGTATCTATGCACATCAAGGATTA
    ATGAATTCTATTGGTCACAGAAAAAATATTTTAAATGATACGTTTAAAATATTAGGTGTT
    GGTGTTGATTTTAATGATGAAAAACAACCTTTTTGGACAGAAAATTATACTGGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1017

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1173 [new locus tag: SA_RS06670 ]
  • symbol: SA1173
  • description: hypothetical protein
  • length: 338
  • theoretical pI: 9.82483
  • theoretical MW: 39523.4
  • GRAVY: -0.779882

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    uncharacterized protein, YkwD family (TIGR02909; HMM-score: 111.2)
  • TheSEED:  
    FIG01108071: hypothetical protein 
  • PFAM:
    no clan definedCAP_assoc_N; CAP-associated N-terminal (PF14504; HMM-score: 119.9)
    CAP (CL0659) CAP; Cysteine-rich secretory protein family (PF00188; HMM-score: 55.8)
    no clan definedDUF3139; Protein of unknown function (DUF3139) (PF11337; HMM-score: 23.8)
    PepSY (CL0320) SmpA_OmlA; SmpA / OmlA family (PF04355; HMM-score: 11)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0
    • N-terminally Anchored Score: 7
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.256
    • Ymax_pos: 25
    • Cmax: 0.146
    • Cmax_pos: 49
    • Smax: 0.686
    • Smax_pos: 15
    • Smean: 0.557
    • D: 0.374
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKKFIVTVVAFLSIIIIAPITEFKPFIHLQNEVRQYIDIHINKETISAENKLDTPKKQQFAFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYNNFIMISYMKDKVNALYTNQNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQNNKEYDVFHKNHIYTTVFYDKHRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQNFDLVNAERKQHQLSTLKYSKQNSETARKHSKDMAKNHYFDHTNLKGQSPFDRLKKDGITFNSAGENLAYGQVSSIYAHQGLMNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTENYTG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]