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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1400 [new locus tag: SA_RS07910 ]
  • pan locus tag?: SAUPAN004153000
  • symbol: phoH
  • pan gene symbol?: phoH
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1400 [new locus tag: SA_RS07910 ]
  • symbol: phoH
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1604821..1605768
  • length: 948
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCCTGGAATTATACAAATAGACGATATGAACCAATCTCAAGCTTTAATTGGAAATAAT
    GATGAACATTTAAAAGCAATTGAAGAGAGTTTCGATGTTGTCATCCATGCAAGAGGACAA
    GAAGTTGCCGTTAAAGGTACAAAAATAGAAAACGTAGAAAAAGCGGAATCAGTATTAATC
    AATTTGCTGAAGGTTATTGATTTAGGTAATAATATTACAATTAAAGATGTTGAAGCAGCT
    ATTAAAATGGCGCATAATAACACAATTCAACATCTGTTAGATTTATATGATGAAGAGATA
    ACTAAAGATGCATTTGGTAAGACGATTCGTGCGAAAACGATGGGGCAACGTATATATGTT
    AATGCCATGAAAAATAATGATTTAGTATTTGGTATAGGTCCTGCTGGTACAGGTAAGACA
    TTCTTAGCTGTAGTTTATGCAGCAAAGCAACTCCGTAAAGGTGCTGTTAAACGTATTGTA
    TTAACAAGACCTGCTGTTGAAGCAGGAGAGTCACTTGGATTTTTACCAGGAGATTTGAAA
    GAAAAGGTAGATCCATATTTAAGACCTTTATATGATGGTCTATATACTGTTCTTGGGCGT
    GAACAAACAGAGCGATTTATTGAAAGAGGCATTATCGAAATAGCGCCACTTGCATATATG
    CGCGGACGAACATTAGAAGATGCATTTGTAATTCTTGATGAGGCGCAGAATACGACACAT
    GCGCAAATGAAAATGTTTTTAACAAGACTAGGTTTTGGCTCAAAAATGGTAGTTACTGGT
    GACCAAACTCAAATCGATTTACCTAAAGGTGTTAAAAGTGGACTTAAGGAAGCGGTCAGT
    AGGTTACACAACGTTAAAGGTATAAGTATATTGAAATTAGATCAGAGCGATGTAGTAAGA
    CATCCATTGGTAAGTAAGATCATTGAACATTATGAAGGAGAGAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    948

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1400 [new locus tag: SA_RS07910 ]
  • symbol: PhoH
  • description: hypothetical protein
  • length: 315
  • theoretical pI: 6.98088
  • theoretical MW: 34913.1
  • GRAVY: -0.165714

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairputative DNA helicase (TIGR00376; EC 3.6.4.12; HMM-score: 17)
  • TheSEED:  
    Phosphorus MetabolismPhosphorus Metabolism - no subcategoryPhosphate metabolism Phosphate starvation-inducible protein PhoH, predicted ATPase 
    CBSS-56780.10.peg.1536 Phosphate starvation-inducible protein PhoH, predicted ATPase 
  • PFAM:
    P-loop_NTPase (CL0023) PhoH; PhoH-like protein (PF02562; HMM-score: 314.7)
    AAA_30; AAA domain (PF13604; HMM-score: 35)
    AAA_19; AAA domain (PF13245; HMM-score: 24.8)
    AAA_22; AAA domain (PF13401; HMM-score: 18.9)
    KH (CL0007) KH_1; KH domain (PF00013; HMM-score: 18)
    P-loop_NTPase (CL0023) IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 16.8)
    UvrD-helicase; UvrD/REP helicase N-terminal domain (PF00580; HMM-score: 13.9)
    Zot; Zonular occludens toxin (Zot) (PF05707; HMM-score: 13.5)
    DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 13.5)
    no clan definedVps16_C; Vps16, C-terminal region (PF04840; HMM-score: 12.7)
    P-loop_NTPase (CL0023) AAA_25; AAA domain (PF13481; HMM-score: 12.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.128
    • Ymax_pos: 27
    • Cmax: 0.187
    • Cmax_pos: 27
    • Smax: 0.116
    • Smax_pos: 14
    • Smean: 0.072
    • D: 0.106
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 15927151 NCBI
  • RefSeq: NP_374684 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MPGIIQIDDMNQSQALIGNNDEHLKAIEESFDVVIHARGQEVAVKGTKIENVEKAESVLINLLKVIDLGNNITIKDVEAAIKMAHNNTIQHLLDLYDEEITKDAFGKTIRAKTMGQRIYVNAMKNNDLVFGIGPAGTGKTFLAVVYAAKQLRKGAVKRIVLTRPAVEAGESLGFLPGDLKEKVDPYLRPLYDGLYTVLGREQTERFIERGIIEIAPLAYMRGRTLEDAFVILDEAQNTTHAQMKMFLTRLGFGSKMVVTGDQTQIDLPKGVKSGLKEAVSRLHNVKGISILKLDQSDVVRHPLVSKIIEHYEGEN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]