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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1616 [new locus tag: SA_RS09090 ]
  • pan locus tag?: SAUPAN004512000
  • symbol: SA1616
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1616 [new locus tag: SA_RS09090 ]
  • symbol: SA1616
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1850940..1851422
  • length: 483
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    TTGAAAAAGTTTTTAAAATTCAAGGGGATGAAAATATGTTTAATGCTATATCTACTGATT
    TTTTTAAGTAGTTGTGGCACAAATAATAAAATAGTAGGCCAACGATTTGAAATACAACAA
    CATAATGAAACAATAGGTAGTATTTACTTTTCAGCAGACTATGCACATATAAGAGGTATA
    GAAAAAGGCACTGCAAAATATTTCATAGACAAAGTAGGCAGCAAACGTTACTTATTTATT
    GAATATATTCCGGATAATGTATTGAATTGCAAGCCGGACTTTTGGAAAACGTTAAAATAT
    AAAAAGGACAAGGTAACATATTATGTATATCTCATTGAAAATTTAGATGATGAAGTATTC
    CATTTAAGTGCATTACAAGACATGAATCGTATACCAATTGACATTGCAGATGATGTGGCA
    ACAATGGGTAAATCACCACATCAAAATGACAGAATGACACTAAAATTAAATAAAAATAAC
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    483

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1616 [new locus tag: SA_RS09090 ]
  • symbol: SA1616
  • description: hypothetical protein
  • length: 160
  • theoretical pI: 9.41412
  • theoretical MW: 18750.7
  • GRAVY: -0.335

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein SAV1798
  • PFAM:
    no clan defined DUF4909; Domain of unknown function (DUF4909) (PF16253; HMM-score: 297.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide LIPO(Sec/SPII) length 24 aa
    • SP(Sec/SPI): 0.000599
    • TAT(Tat/SPI): 0.000077
    • LIPO(Sec/SPII): 0.999004
    • Cleavage Site: CS pos: 24-25. LSS-CG. Pr: 0.9996
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKFLKFKGMKICLMLYLLIFLSSCGTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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