From AureoWiki
Jump to: navigation, search
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1845 [new locus tag: SACOL_RS09465 ]
  • pan locus tag?: SAUPAN004512000
  • symbol: SACOL1845
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL1845 [new locus tag: SACOL_RS09465 ]
  • symbol: SACOL1845
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1899906..1900388
  • length: 483
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    TTGAAAAAGTTTTTAAAATTCAAGGGGATGAAAATATGTTTAATGCTATATCTACTGATT
    TTTTTAAGTAGTTGTAGCACAAATAATAAAATAGTAGGCCAACGATTTGAAATACAACAA
    CATAATGAAACAATAGGTAGTATTTACTTTTCAGCAGACTATGCACATATAAGAGGTATA
    GAAAAAGGCACTGCAAAATATTTCATAGACAAAGTAGGCAGCAAACGTTACTTATTTATT
    GAATATATTCCGGATAATGTATTGAATTGCAAGCCGGACTTTTGGAAAACGTTAAAATAT
    AAAAAGGACAAGGTAACATATTATGTATATCTCATTGAAAATTTAGATGATGAAGTATTC
    CATTTAAGTGCATTACAAGACATGAACCGTATACCAATTGACATTGCAGATGATGTGGCA
    ACAATGGGTAAATCACCACATCAAAATGACAGAATGACACTAAAATTAAATAAAAATAAC
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    483

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL1845 [new locus tag: SACOL_RS09465 ]
  • symbol: SACOL1845
  • description: hypothetical protein
  • length: 160
  • theoretical pI: 9.41412
  • theoretical MW: 18780.8
  • GRAVY: -0.3375

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Hypothetical protein SAV1798 
  • PFAM:
    no clan definedDUF4909; Domain of unknown function (DUF4909) (PF16253; HMM-score: 297.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0.5
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.277
    • Ymax_pos: 34
    • Cmax: 0.157
    • Cmax_pos: 34
    • Smax: 0.858
    • Smax_pos: 14
    • Smean: 0.627
    • D: 0.414
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKKFLKFKGMKICLMLYLLIFLSSCSTNNKIVGQRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIENLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN

Experimental data[edit source | edit]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]