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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1685 [new locus tag: SA_RS09670 ]
  • pan locus tag?: SAUPAN004850000
  • symbol: SA1685
  • pan gene symbol?: mutY
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1685 [new locus tag: SA_RS09670 ]
  • symbol: SA1685
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1932397..1933434
  • length: 1038
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGTATCAGCAGTCTAGTTTTAAAGAAAATTTGATACACTGGTTTGATGAAAATCAAAGA
    GAAATGCCATGGCGACAAACGACCAATCCGTACTATATTTGGTTAAGTGAGGTCATGTTA
    CAACAGACACAAGTTAAAACAGTTATTGACTATTATCATCGTTTTGTTGAACGATTTCCA
    ACTGTGGAAGTTTTGAGTCAAGCTTCGGAAGATGAAGTGTTAAAGTATTGGGAAGGCTTA
    GGATATTATAGTAGAGCTCGAAATTTTCATACGGCGATTAAAGAAGTTTATGATAAATAT
    GAAGGCTTAGTTCCCAAAGATCCTGATCAATTTAAAGCGTTAAAAGGTGTTGGCCCATAC
    ACACAAGCTGCAGTAATGAGCATTGCATATAATGTACCACTAGCAACTGTAGACGGAAAT
    GTTTTTCGAGTATGGTCTAGATTGAATGATGACTATCGAGATATTAAATTACAATCGACG
    AGGAAATCGTACGAACAAGAATTGTTACCGTATGTTACTACAGAAGCTGGAACGTTTAAT
    CAAGCTATGATGGAATTAGGGGCATTAATTTGTACACCAAAAAATCCATTATGCTTATTT
    TGTCCAGTTCAAGAAAACTGTGAGGCATTTGATAAAGGTACATTTGAAAAGTTACCTGTT
    AAATCTAAAAATGTAAGTAAAAAAGTAATTGAGCAATCCGTCTTTTTAATTAGAAATAAT
    CAAGGTCAATATCTGTTGCAAAAGCGTAGCGAAAAATTATTGCATGGTATGTGGCAATTT
    CCTATGTTTGAAAGTGAGCATGCTAGACGTAAAATGACTGAAAAAATCGGTCATGACATT
    CAACCAGTAGAAACACCTATTTTTGAGTTGAAGCATCAATTTACTCATTTAACATGGAAG
    ATTAAAGTATACGCCGCTTCAGGAGCAATTAACATTGAAACATTACCAGATGACATGATT
    TGGTTTAATTTAAGTGATCGAGACCAATATACATTCCCTGTACCTATGTCAAAGATTTAT
    CAATTTATAAATGGGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1038

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1685 [new locus tag: SA_RS09670 ]
  • symbol: SA1685
  • description: hypothetical protein
  • length: 345
  • theoretical pI: 6.94944
  • theoretical MW: 40620.2
  • GRAVY: -0.497101

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairA/G-specific adenine glycosylase (TIGR01084; EC 3.2.2.-; HMM-score: 327.4)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairendonuclease III (TIGR01083; EC 4.2.99.18; HMM-score: 74.8)
  • TheSEED:  
    DNA MetabolismDNA repairDNA repair, bacterial A/G-specific adenine glycosylase (EC 3.2.2.-) 
    CBSS-176280.1.peg.1561 A/G-specific adenine glycosylase (EC 3.2.2.-) 
    CBSS-261594.1.peg.788 A/G-specific adenine glycosylase (EC 3.2.2.-) 
  • PFAM:
    NUDIX (CL0261) NUDIX_4; NUDIX domain (PF14815; HMM-score: 78.2)
    HHH (CL0198) HhH-GPD; HhH-GPD superfamily base excision DNA repair protein (PF00730; HMM-score: 56.3)
    HHH; Helix-hairpin-helix motif (PF00633; HMM-score: 28.1)
    no clan definedEndIII_4Fe-2S; Iron-sulfur binding domain of endonuclease III (PF10576; HMM-score: 16.9)
    NUDIX (CL0261) NUDIX; NUDIX domain (PF00293; HMM-score: 15.4)
    no clan definedNDUFB10; NADH-ubiquinone oxidoreductase subunit 10 (PF10249; HMM-score: 13)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.1
    • Ymax_pos: 69
    • Cmax: 0.119
    • Cmax_pos: 69
    • Smax: 0.113
    • Smax_pos: 68
    • Smean: 0.066
    • D: 0.087
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAASGAINIETLPDDMIWFNLSDRDQYTFPVPMSKIYQFING

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]