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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1793 [new locus tag: SA_RS10300 ]
  • pan locus tag?: SAUPAN005102000
  • symbol: SA1793
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1793 [new locus tag: SA_RS10300 ]
  • symbol: SA1793
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2037319..2037804
  • length: 486
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACTGCTGGAACACAACGAGCTATGGATTTTGAAAGTCATCGCTTATGCACGATTAAG
    GCAAAGCAAGAGCTACGAATTGGTACGTGGTCAATTTTACCATTTGACATTGAACATGAT
    GCTAACGAGCCTGTGGCTTTCTTATTACAAAGCACATTAGGTTATAAGGTCCTGTATGTT
    ACTGATACGAAGTATCTGAAATACAAATTTAACGGCATTACGCACATGATGTTAGAAGTT
    AATTATATCTATGAACAAATGCAAGAAAACATAAAAAACGGCAGTGTACACAGCGCATTA
    GCAAACAGAATTATGGAGTCTCATTTTAGCTTAGAACATGCTATCGGAATGTTGAAAGCA
    AATGATTTAACTAGACTCGAAGAAATACATTTAATTCATTTAAGTAGTCAAAATTCAAAT
    GCAAAATACATTAAAAGTGAAATACAAAAAGTGACGGGCGCGCCCGTTTATGTTGGAGGT
    TTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    486

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1793 [new locus tag: SA_RS10300 ]
  • symbol: SA1793
  • description: hypothetical protein
  • length: 161
  • theoretical pI: 7.29231
  • theoretical MW: 18347
  • GRAVY: -0.221739

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Iron acquisition and metabolismIron acquisition and metabolism - no subcategoryHeme, hemin uptake and utilization systems in GramPositives Metallo-beta-lactamase superfamily domain protein in prophage 
  • PFAM:
    Metallo-HOrase (CL0381) Lactamase_B_2; Beta-lactamase superfamily domain (PF12706; HMM-score: 20.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.12
    • Ymax_pos: 22
    • Cmax: 0.133
    • Cmax_pos: 22
    • Smax: 0.219
    • Smax_pos: 7
    • Smean: 0.122
    • D: 0.121
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTAGTQRAMDFESHRLCTIKAKQELRIGTWSILPFDIEHDANEPVAFLLQSTLGYKVLYVTDTKYLKYKFNGITHMMLEVNYIYEQMQENIKNGSVHSALANRIMESHFSLEHAIGMLKANDLTRLEEIHLIHLSSQNSNAKYIKSEIQKVTGAPVYVGGL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]