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NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1850 [new locus tag: SA_RS10620 ]
  • pan locus tag?: SAUPAN005290000
  • symbol: SA1850
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1850 [new locus tag: SA_RS10620 ]
  • symbol: SA1850
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2088036..2089115
  • length: 1080
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGTGGATGATTTTTAGTGGCTTAATTGTCGGGGGACTCTTAGGTTTTGTCATGCAAAGA
    ACAAGATTTTGTTTAACAGGTGGCTTTCGAGATATGTATGTGCAAAAGAATAATAAGATG
    TTCTATGCATTATTAATCGCTATTACTATTCAAAGTATAGGATTATTGATTTTGACGGCA
    ACAGATATTTTACAAATTCCTGCACATAGTTTTCCAATATTGGGAACAATTATAGGTTCT
    TTTATTTTTGGAATTGGAATAGTATTGGCTGGAGGGTGTGCAACAGGTACTTGGTATCGC
    GCTGGTGAAGGGCTAATTGGTAGTTGGATTGCATTAGTATTATATGCTGTTACTGCAGCA
    ATCACTAAAACAGGGATTTTAAAGCCAGTAATGGATAAAATTAATCAACCAACGAATGTA
    AATAGTGATATGTCTCAAACAACTGGCATTCCGTTTTGGGGATTAGTCGTTATATTAACT
    ATAATCACCATTTTTCTAGTTGTAAGAACACTCAATAATAAGAAAGTTCGAGTTGCTGTT
    CCAAAACTAAAGCAACGTTATACAGGTATTAGATATTACCTTTTCGAAAAACGATACCAT
    CCATTTATTGCAGCAATTGTAATTGGACTTATCGCACTCTTAGCTTGGCCAATGAGTGCA
    TCAACTGGAAGAAATGACGGTTTAGGTATAACAACGCCTTCAGCAAATTTAGTACACTTT
    TTGATTACAGGTGAAACTAAATTTATTGATTGGGGTGTCTTTTTAGTTCTAGGAATTTTC
    ATTGGTTCATATATTGCAGCTAGAGGATCAAGAGAATTTAAATGGCGATTGCCAGACAAG
    ATTACAATACGAAACAGTGCCATTGGTGGCATATGTATGGGATTTGGTGCGTCAGTTGCT
    GGTGGTTGTTCTATCGGTAACGGTTTGGTTGAAACGGCAACGATGACTTGGCAAGGATGG
    ATTGCGCTAGCATCGATGATAGTTGGTGTATGGACAATGAGTCATTTTATCTTTGTTCGT
    CCAATGAAAAAAGTACAACAACAATCCGCAAAGGTTAAACAGCAAACGCAAATAGTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1850 [new locus tag: SA_RS10620 ]
  • symbol: SA1850
  • description: hypothetical protein
  • length: 359
  • theoretical pI: 10.7059
  • theoretical MW: 39252.5
  • GRAVY: 0.600279

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    putative selenium metabolism protein, YedE family (TIGR04112; HMM-score: 51.7)
    Hypothetical proteinsConservedTIGR00701 family protein (TIGR00701; HMM-score: 11.8)
    tandem five-TM protein (TIGR01218; HMM-score: 8.4)
  • TheSEED:  
    UPF0394 inner membrane protein YeeE 
  • PFAM:
    no clan definedSulf_transp; Sulphur transport (PF04143; HMM-score: 332.7)
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 6.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.126
    • Ymax_pos: 11
    • Cmax: 0.122
    • Cmax_pos: 25
    • Smax: 0.247
    • Smax_pos: 1
    • Smean: 0.138
    • D: 0.13
  • predicted transmembrane helices (TMHMM): 9

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MWMIFSGLIVGGLLGFVMQRTRFCLTGGFRDMYVQKNNKMFYALLIAITIQSIGLLILTATDILQIPAHSFPILGTIIGSFIFGIGIVLAGGCATGTWYRAGEGLIGSWIALVLYAVTAAITKTGILKPVMDKINQPTNVNSDMSQTTGIPFWGLVVILTIITIFLVVRTLNNKKVRVAVPKLKQRYTGIRYYLFEKRYHPFIAAIVIGLIALLAWPMSASTGRNDGLGITTPSANLVHFLITGETKFIDWGVFLVLGIFIGSYIAARGSREFKWRLPDKITIRNSAIGGICMGFGASVAGGCSIGNGLVETATMTWQGWIALASMIVGVWTMSHFIFVRPMKKVQQQSAKVKQQTQIV

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: SA1453 (CymR*)
    CymR* (TF) important in Cysteine metabolism  RegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]