From AureoWiki
Jump to: navigation, search
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2369 [new locus tag: SA_RS13570 ]
  • pan locus tag?: SAUPAN006261000
  • symbol: SA2369
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA2369 [new locus tag: SA_RS13570 ]
  • symbol: SA2369
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2658930..2660270
  • length: 1341
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGTTAGAAGTGAAATATGATATGAGAACTGGGCATTATACGCCCATACCTCATGAACCT
    CATTATTTGGTTATTAGCCATGCGGATAAACTTACCGCAACAGAAAAAGCGAAATTAAGA
    TTATTAATCATAAAACAGAAATTAGATATTTCATTGGCAGAAAGTGTAGTTTCTTCGCCT
    ATAGCGAGTGAACATGTGATAGAACAATTGACACTATTTCAACATGAGCGACGACATTTA
    AGACCTAAAATAAGTGCGACATTTTTAGCCTGGTTGTTGATATTTTTAATGTTTGCATTG
    CCAATTGGTATCGCTTATCAATTTTCAGATTGGTTTCAAAATCAGTATGTATCAGCATGG
    ATAGAATATTTAACTCAAACAACATTGCTCAATCACGATATATTACAGCATATATTATTT
    GGTGATTATGGTGTGCTATCACTTGGAACATATTCGCTCGTATGGGCATTGCCGGTTGTA
    ATATTAATTAGTTTATCAACTGCAATAATTGATCAAACAGGACTCAAATCATGGATGATA
    TGGGCAATTGAACCGTCAATGTTATGGATCGGATTACAAGGTAATGATATCGTGCCACTA
    TTAGAAGGATTTGGATGTAATGCAGCAGCTATTTCACAAGCAGCACACCAATGCCATACC
    TGCACGAAGACACAGTGTATGAGTTTAATAAGCTTTGGTAGTTCTTGTAGTTATCAAATA
    GGTGCGACATTATCTATTTTTAGTGTAGCTGGAAAGTCATGGCTATTTATGCCGTACTTA
    ATATTAGTACTTTTAGGTGGCATCTTACATAATAGGATATGGTTGAAAAAGAATGATCAA
    CAACTTAGTGTTCCGCTACCTTATGATAGGCAATTACATATGCCAAATATACGTCAAATG
    TTGCTACAAATGTGGCAAAATATACAAATGTTTATCGTTCAAGCGCTACCTATTTTTATC
    ACAATCTGTCTTATTGTTAGTATTTTATCACTAACGCCAATTTTGAATGTTTTATCACAA
    ATATTTACACCTATATTATCGTTATTAGGCATCTCTTCAGAATTGTCACCAGGGATTTTA
    TTTTCAATGATTCGAAAAGACGGCATGCTCTTGTTTAATTTGCATCAAGGCGCCTTATTA
    CAAGGAATGACAGCAACACAGTTACTACTACTTGTGTTTTTTAGTTCAACATTTACAGCG
    TGCTCGGTCACAATGACGATGCTTTTGAAACATTTAGGTGGTCAGTCAGCACTAAAATTA
    ATTGGAAAGCAAATGGTGACATCATTGTCTTTAGTTATTGGTGTAGGCATCATTGTTAAA
    ATAGTAATGCTGATTATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1341

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA2369 [new locus tag: SA_RS13570 ]
  • symbol: SA2369
  • description: hypothetical protein
  • length: 446
  • theoretical pI: 8.47402
  • theoretical MW: 49901.3
  • GRAVY: 0.632735

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundsferrous iron transport protein B (TIGR00437; HMM-score: 79.4)
  • TheSEED:  
    CBSS-196620.1.peg.2477 Ferrous iron transport protein B 
  • PFAM:
    no clan definedGate; Nucleoside recognition (PF07670; HMM-score: 46.3)
    Phage_holin_3_7; Putative 3TM holin, Phage_holin_3 (PF05449; HMM-score: 16.1)
    Bunya_G2; Bunyavirus glycoprotein G2 (PF03563; HMM-score: 13.7)
    FeoB_C; Ferrous iron transport protein B C terminus (PF07664; HMM-score: 12.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.123
    • Ymax_pos: 60
    • Cmax: 0.137
    • Cmax_pos: 29
    • Smax: 0.218
    • Smax_pos: 52
    • Smean: 0.088
    • D: 0.109
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MLEVKYDMRTGHYTPIPHEPHYLVISHADKLTATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGLKSWMIWAIEPSMLWIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator: SA1383 (Zur*)
    Zur* (TF) important in Zinc homeostasisRegPrecise

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]