From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2380 [new locus tag: SA_RS13630 ]
  • pan locus tag?: SAUPAN006278000
  • symbol: SA2380
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA2380 [new locus tag: SA_RS13630 ]
  • symbol: SA2380
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2668089..2669771
  • length: 1683
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGAACCAACATTTACTAGGAAATCCAAAATTAACTGTAACTCATGTCAATGAAGTGAAA
    ACCGGTATTAACCACATCGTTGTCGACAGTGTTCAATATGGAAATCAAGAAATGATTATG
    GAAAAAGATGTCACTGTGGAAATGCGCGATGGCGAAAAATTATATATTAATATTTTCAGA
    CCAAATAAAGATGGCAAATTCCCTGTAGTTATGTCTGCAGATACTTACGGTAAAGATAAT
    AAGCCTAAAATCACCAATATGGGTGCCCTTTGGCCAACATTAGGCGCCATTCCGACATCT
    AGTTTTACACCTGAAGAATCACCAGACCCAGGATTTTGGGTACCAAACGATTATGTTGTA
    GTTAAAGTTGCATTACGCGGTAGTGACAAATCCAAAGGCGTCTTATCTCCATGGTCAAAA
    AGAGAAGCGGAAGATTATTACGAAGTGATTGAATGGGCAGCAAAACAGCCATGGAGTAAT
    GGAAATATCGGAACAAATGGTGTTTCTTATCTTGCGGTGACTCAATGGTGGGTCGCATCA
    TTAAATCCACCACATTTAAAAGCAATGATTCCTTGGGAAGGATTAAATGATATGTATAGA
    GAAGTAGCCTTTCACGGGGGTATTCCTGATACTGGCTTTTATCGTTTCTGGATACAAGGT
    ATTTTTGCGAGATGGACAGATAATCCAAATATCGAAGACATGATTCAAGCACAACAAGAA
    CACCCTTTGTTCGATGATTTTTGGAAACAGCGTCAAGTGCCATTATCACAAATTAAAACA
    CCTCTACTAACATGTGCTAGTTGGTCTACACAAGGTTTGCACAACCGTGGCTCTTTTGAA
    GGATTTAAACAAGCTGCATCAGAAGAAAAATGGCTATATGTGCATGGACGTAAAGAGTGG
    GAAAGTTACTACGCTAGAGAAAATCTCGAACGCCAAAAATCATTCTTTGATTTTTACCTT
    AAAGAAGAAAATAACGATTGGAAAGATACGCCTCATGTCATATATGAAGTTAGAGATCAA
    TTTTATAAAGGCGAATTCAAATCAGCGTCAGCGTTCCCTTTACCTAACACAGAATATACA
    CCATTGTATTTAAATGCTGAAAATCACACATTGAATCATGCAAAGATTAGTAGCGCGTAT
    GTCGCACAATATGACTCTGAAGATAAACGACAAGATGTAAGTTTTAAATATACGTTTGAC
    AAAGATACTGAGTTAGTTGGAAACATGAACTTAAAACTATGGGTAAGCACTACAGACTCA
    GACGATATGGATTTATTTGCAGGTATTAAAAAGTTAGATCGTCGTGGTAATGAAGTTAAC
    TTCCCTGATTTTAATCATATTGAAAATGGTCAAGTAGCTACTGGTTGGTTACGCGTATCA
    CATCGTGAATTAGATCAAGAAAAATCCACAATCGCGCAACCTTGGCATAAACATGAAACA
    GAATTAAAGTTGTCACAAGATGAGATTGTACCTGTTGAAATCGAATTGTTACCTTCAGGC
    ACGCTATTTAAACAAGGCGAAACATTGGAAGTTGTTGTAAAAGGTAGTGAAATTGTAATT
    GGTAATAGTACCCCTGGCATGAAAACACGTTATGAACATGAAGAAACCATAAATAACGGC
    ATGCACATGATTTATACTGGTGGTAAATATGATTCACAATTAATCATTCCTATCGTTAAT
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1683

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA2380 [new locus tag: SA_RS13630 ]
  • symbol: SA2380
  • description: hypothetical protein
  • length: 560
  • theoretical pI: 5.21177
  • theoretical MW: 64414.8
  • GRAVY: -0.62125

Function[edit | edit source]

  • TIGRFAM:
    Unknown function Enzymes of unknown specificity hydrolase CocE/NonD family protein (TIGR00976; HMM-score: 256.9)
  • TheSEED  :
    • Predicted acyl esterase/dipeptidyl-peptidase
  • PFAM:
    GBD (CL0202) PepX_C; X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain (PF08530; HMM-score: 160.8)
    AB_hydrolase (CL0028) Peptidase_S15; X-Pro dipeptidyl-peptidase (S15 family) (PF02129; HMM-score: 145.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005113
    • TAT(Tat/SPI): 0.000198
    • LIPO(Sec/SPII): 0.000551
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNQHLLGNPKLTVTHVNEVKTGINHIVVDSVQYGNQEMIMEKDVTVEMRDGEKLYINIFRPNKDGKFPVVMSADTYGKDNKPKITNMGALWPTLGAIPTSSFTPEESPDPGFWVPNDYVVVKVALRGSDKSKGVLSPWSKREAEDYYEVIEWAAKQPWSNGNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGLNDMYREVAFHGGIPDTGFYRFWIQGIFARWTDNPNIEDMIQAQQEHPLFDDFWKQRQVPLSQIKTPLLTCASWSTQGLHNRGSFEGFKQAASEEKWLYVHGRKEWESYYARENLERQKSFFDFYLKEENNDWKDTPHVIYEVRDQFYKGEFKSASAFPLPNTEYTPLYLNAENHTLNHAKISSAYVAQYDSEDKRQDVSFKYTFDKDTELVGNMNLKLWVSTTDSDDMDLFAGIKKLDRRGNEVNFPDFNHIENGQVATGWLRVSHRELDQEKSTIAQPWHKHETELKLSQDEIVPVEIELLPSGTLFKQGETLEVVVKGSEIVIGNSTPGMKTRYEHEETINNGMHMIYTGGKYDSQLIIPIVN

Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]