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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0266 [new locus tag: SACOL_RS01350 ]
  • pan locus tag?: SAUPAN001166000
  • symbol: SACOL0266
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL0266 [new locus tag: SACOL_RS01350 ]
  • symbol: SACOL0266
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 304258..305424
  • length: 1167
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAAAACAATACATTTGTTTCGCATCTACCACTCTTTTTTATTGAAAAAGTGGTATTTG
    ATTATCTATTTACTATTTATATTAGCGGCACTCCTTATTACATTAACGACAATCCAACAT
    GTAACAGAAGATGACAATCATTTTAATATAGGTGTCGTAGATAAAGATCAATCAAGTGAA
    ACGAAATTAATCTTAAACTCTATTGGTAAAGGGAGTAACCTAGGAAAAAACGTGAGCATT
    AAAGCATATGATGATAAGCAAGCACATACTTTGTTAAAAAAACATAAACTTCAAGGCTAT
    TTTGTTTTTGATAAAGGTATGACCAAGGCATTTTATAAACAAGGCGAACTACCAATTTCA
    GTATATACATATGATCAACAATCCATGAAAAGTGTCGTGCTATCTCAGCTAACAGATTCT
    GTTTACCAACGTCTTATGCGATCAATGGGTGGCATCTTAGCTTTTCAAGACTTAGCACCG
    AAAGCATCACATTCTGACAGTATCAATGTTATGACTGATTTGCTGATTACAGGATTAAAC
    CGTTCAGGTGCATTTAACTTAGAACCGATTCATTTATACGATACGGGCAGTTATTATGCA
    ATTACAGGATTTTTAACAACGGTATTCATCTTTGCACTATCTTTATTTACAGTTTTGAAA
    ATGAATCAAGATACTGTATTGAAAGCGCGATTGAAAATGTTTCATTTTTCTAAAGAGCGT
    TTATTAATCATTCGTACGTTGATTACATGGTTTTATACTATGTTATGGAGTATCGTTGGT
    GTAGTTTGGATTGTGTTCAGTATTCCGAATATCTTTGAATTATATAATTGGCCAACGTTA
    GCCATTCATTTAAGCTATTATGTTACCTTTTTAATACTGTGGTTATTACTCATCGAACTT
    TTAACAACAGGCTTGTTGAATAGTATTAGTAAAGTCATATTAGCTATTGTCATCCTGGTG
    TTATCTGGTTTAACAATACCTACGATTTTTTTACAACATATAGCAAATGGTGTTTTCAAT
    ATTCAACCGTTCGCAGTTGTAACAAATCAATTGTTAGAAATTATTTTAAACAACTACATT
    TTAGAACTGCACCCTAGTTTCTATCTTAGCTTCATCGCACTTTTGATAATTAATTTAGCT
    GTATTGGTTTGGAGGTATCGTCAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1167

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL0266 [new locus tag: SACOL_RS01350 ]
  • symbol: SACOL0266
  • description: hypothetical protein
  • length: 388
  • theoretical pI: 9.70298
  • theoretical MW: 44535.4
  • GRAVY: 0.529897

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01108048: hypothetical protein 
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 82)
    Omega_toxin (CL0083) Conotoxin; Conotoxin (PF02950; HMM-score: 12.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.294
    • Ymax_pos: 44
    • Cmax: 0.231
    • Cmax_pos: 44
    • Smax: 0.586
    • Smax_pos: 39
    • Smean: 0.183
    • D: 0.251
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKTIHLFRIYHSFLLKKWYLIIYLLFILAALLITLTTIQHVTEDDNHFNIGVVDKDQSSETKLILNSIGKGSNLGKNVSIKAYDDKQAHTLLKKHKLQGYFVFDKGMTKAFYKQGELPISVYTYDQQSMKSVVLSQLTDSVYQRLMRSMGGILAFQDLAPKASHSDSINVMTDLLITGLNRSGAFNLEPIHLYDTGSYYAITGFLTTVFIFALSLFTVLKMNQDTVLKARLKMFHFSKERLLIIRTLITWFYTMLWSIVGVVWIVFSIPNIFELYNWPTLAIHLSYYVTFLILWLLLIELLTTGLLNSISKVILAIVILVLSGLTIPTIFLQHIANGVFNIQPFAVVTNQLLEIILNNYILELHPSFYLSFIALLIINLAVLVWRYRQ

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]