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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0341 [new locus tag: SACOL_RS01715 ]
- pan locus tag?: SAUPAN001444000
- symbol: SACOL0341
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0341 [new locus tag: SACOL_RS01715 ]
- symbol: SACOL0341
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 364751..365551
- length: 801
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3236903 NCBI
- RefSeq: YP_185233 NCBI
- BioCyc: see SACOL_RS01715
- MicrobesOnline: 911812 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGGGAGAAGTATCGTGGATAAAACTTAAAGTTGGCATGTTTGATGACAGCAAAATCAAA
TATATCGAAGCTTTACCCGAAAGAGATACGATCATAACTATTTGGGTTAAGTTGCTAACT
TTATCAGGAAAGTACAATGAACAAGGTTATATTATGCTATCCGAAAACTTGCCGTACAAC
GAAGAAATGTTAGCAAATGAATTTAATAGACCTATTAACTCAATAAGGTTAGCAATTCAA
ACTTTTGAGACATTGGGCATGATTGAAAAAGTTAATGGTGTCATAAAAGTGACAAACTGG
GAGAAGCATCAAAGCTTAGATAGCAAAGCTAAGCATAAAGAAAAAAATAAATTGCGACAA
CAACGCTATCGAGAGAGACAGAAAAAGTTACTAGAAGCAAAACGTAACGTTACCGTAACG
TTACGTAACGATACAGAAGAAGAAAGAGAAGAAGAAAAAGAAGAAGAATATAAGAATAAA
GAAGAAGAAAGAGAAGCCGTCTTCTCATCTTCAATAAAATATATAATTGCAAATTTGGAT
GATAAGTTAACGCCTAATCAAATGGAGCAATTAGGGTTTGCTATTGATGATATAGGTACG
AACGCTTTTGAAGTTGTAAAAGTAGGTGTTGAGTACACTAAAAGCAAAAGTGCGCATGGT
GGCTACTTAATTAAAGTTTTGAACAACTGGGCTAAAGAGAATGTCAAAACAAAAGAAGAT
GCAGAACACAAAATAGCGCCTAGGAAAAACACAACTGATGATGTCATTGCGCAAATGGAA
AAAGAATTGAGTGATGACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0341 [new locus tag: SACOL_RS01715 ]
- symbol: SACOL0341
- description: hypothetical protein
- length: 266
- theoretical pI: 5.57701
- theoretical MW: 30991
- GRAVY: -0.817293
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage replisome organizer, putative, N-terminal region (TIGR01714; HMM-score: 177.3)and 3 moreDNA metabolism DNA replication, recombination, and repair DnaD domain protein (TIGR01446; HMM-score: 62.3)Mobile and extrachromosomal element functions Prophage functions DnaD domain protein (TIGR01446; HMM-score: 62.3)Energy metabolism Sugars L-fucose isomerase (TIGR01089; EC 5.3.1.25; HMM-score: 12.2)
- TheSEED :
- Phage replication initiation
- PFAM: HTH (CL0123) Phage_rep_org_N; N-terminal phage replisome organiser (Phage_rep_org_N) (PF09681; HMM-score: 161.2)and 4 moreno clan defined DnaB_2; Replication initiation and membrane attachment (PF07261; HMM-score: 44.1)ssDNA-exonuc_C; Single-strand DNA-specific exonuclease, C terminal domain (PF10141; HMM-score: 14.7)CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus (PF16019; HMM-score: 12.5)Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002556
- TAT(Tat/SPI): 0.000226
- LIPO(Sec/SPII): 0.000398
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGEVSWIKLKVGMFDDSKIKYIEALPERDTIITIWVKLLTLSGKYNEQGYIMLSENLPYNEEMLANEFNRPINSIRLAIQTFETLGMIEKVNGVIKVTNWEKHQSLDSKAKHKEKNKLRQQRYRERQKKLLEAKRNVTVTLRNDTEEEREEEKEEEYKNKEEEREAVFSSSIKYIIANLDDKLTPNQMEQLGFAIDDIGTNAFEVVKVGVEYTKSKSAHGGYLIKVLNNWAKENVKTKEDAEHKIAPRKNTTDDVIAQMEKELSDD
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
PLoS One: 2009, 4(12);e8176
[PubMed:19997597] [WorldCat.org] [DOI] (I e) - ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int J Med Microbiol: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p)