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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2102 [new locus tag: SACOL_RS11000 ]
  • pan locus tag?: SAUPAN005401000
  • symbol: SACOL2102
  • pan gene symbol?: atpI
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL2102 [new locus tag: SACOL_RS11000 ]
  • symbol: SACOL2102
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2163262..2163615
  • length: 354
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGAGTCGTTTCTACAACATTTTTAAACAGTTCATTCAATATTATTTTTATCTAATAATA
    ATATTGGGAGGATTATACCTTTATACACACCATGCATTTATCTTAGGATTAATCATTGGT
    GTTACTGGTTCTGCAATCAACACATGTATTTTTGAATGCTATTTAGCTAAAGCTAAAAGA
    CCAGACACTATGCATATTTCAACTGGAAATATGTGGCGATACTTAGTTGCAATTATTGCC
    TGTATGATTTGGTACCTTAATAAAGCGCATGTAAGTATCATCGGTATAATTATTGGTTTA
    ATGATTTCATATGTTGTAGTTATCATACGTCCTTTACTAAAGGTGAGCAAATAA
    60
    120
    180
    240
    300
    354

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL2102 [new locus tag: SACOL_RS11000 ]
  • symbol: SACOL2102
  • description: hypothetical protein
  • length: 117
  • theoretical pI: 9.84561
  • theoretical MW: 13487.3
  • GRAVY: 0.92906

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    RespirationATP synthasesF0F1-type ATP synthase ATP synthase protein I 
  • PFAM:
    ATPase_I_AtpR (CL0478) ATP-synt_I; ATP synthase I chain (PF03899; HMM-score: 29)
    no clan definedMNHE; Na+/H+ ion antiporter subunit (PF01899; HMM-score: 14.2)
    GNVR; G-rich domain on putative tyrosine kinase (PF13807; HMM-score: 10)
    Phage_holin_6_1; Bacteriophage holin of superfamily 6 (Holin_LLH) (PF09682; HMM-score: 9.8)
    CopD_like (CL0430) DUF4149; Domain of unknown function (DUF4149) (PF13664; HMM-score: 8.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.138
    • Ymax_pos: 59
    • Cmax: 0.189
    • Cmax_pos: 59
    • Smax: 0.136
    • Smax_pos: 43
    • Smean: 0.067
    • D: 0.11
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSRFYNIFKQFIQYYFYLIIILGGLYLYTHHAFILGLIIGVTGSAINTCIFECYLAKAKRPDTMHISTGNMWRYLVAIIACMIWYLNKAHVSIIGIIIGLMISYVVVIIRPLLKVSK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]