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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS00200 [old locus tag: SACOL0036 ]
  • pan locus tag?: SAUPAN000107000
  • symbol: SACOL_RS00200
  • pan gene symbol?:
  • synonym:
  • product: IS5/IS1182 family transposase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS, pseudogene
  • locus tag: SACOL_RS00200 [old locus tag: SACOL0036 ]
  • symbol: SACOL_RS00200
  • product: IS5/IS1182 family transposase
  • replicon: chromosome
  • strand: -
  • coordinates: 42977..44613
  • length: 1637
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (42977..44613) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATACATGGAGGTCAATATGGAAACAAAACAAATCAACATCGTTTTACTGTAAATGATATT
    GTTGAAACAATTCCTGACAATGAATTCGACGAATTCAGACATCACCGTGGTGCAACTTCG
    TACCATCCTAAAATGATGTTAAAAGTGATTCTATATGCCTACACACAATCTGTATTCTCA
    GGTCGTAAAATAGAAAAAATGCTTAATGATAGCATCCGAATGATGTGGCTATCACAAAAT
    CAAAAACCTTCTTATAAAACAATTAATCAATTTAGAGTAAATCCAAAAGTAGATGCTTTA
    TTAGAATCTTTATTTATTCAATTTTACAGTCAGTGTGTAAAACAAAATCTTATAGATGAT
    AAAGCTATTTTTATTGATGGTACAAAAATTGAAGCAAATGCCAATCGATATACATTTGTA
    TGGAAAAAGAGTATTCAAAACCATGAATCAAAGATGAATGAGGATTCTAAAGCCCTCTAC
    CATGAATTGGTAACCAATAAAATCATACCGGAAATTAAAGAAGATCATGATAATGAATTA
    ACAAAAGAAGAAATAGATTTGATTGGTAGTCACTTAGATAAAGAAATCGAAGATTTAAAC
    CAACATATCAACAATGAAAAATGTACTAAAACAAGAAAACAAATACGTCTCAAAAGAACT
    AAAATCAAAAAATACAAAAAGCAAATCAATGATTATTTTGAGCGAAAGTATCGATACGAA
    TTTCAAAAATCTATTTTAAAGGATAGAAATAGTTATTCTAAGACAGATTATGATGCGACA
    TTTATGAGAATGAAAGAAGATCACATGAAAAATGGACAACTTAAGCCAGGGTATAATTTA
    CAAATAGCAACAAATTCCCAATTTGTTTTATCTTATAATGTGTATCAAAATCCAACGGAT
    ACTAGAACGATGATTCCATTTTTAAATTCAATTCAAGAGACCTACGGTCATTTACCTGAA
    TATATTGTAGCTGATGCAGGTTATGGTAGTGAATCAAATTATAAGGCAATTATAGATGAC
    TTTAATCGAACGCCACTCATAACATATGGAATGTTTATAAAAGATAAAACTAAAAAATAT
    AAAAGTGACATCTTTAATACTCAAAATTGGAACTATGACGAAATTAATGACGAATTCATT
    TGTCCGAATAATAAACGGCTAGGTTTTAAAAGATATGCCTATCGTCATGATAAGTATGGT
    TATAAGCGAGACTTCAAATTATATGAATGTGATGATTGTTCAGAATGTCCTCTGAAAAAT
    CAATGTATGAACTTCAATTCAAAAACAAACAAAAAAATAATGAAGAATTATAACTGGGAA
    TATTTTAAATCCCAAATTAACAAAAAGCTTTCAGAACCAGAAACAAAAAATATCTACAGT
    CAAAGAAAAATTGATGTGGAACCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACT
    CGGATGTCTGTCCGAGGACTCAATAAAGTCAAAAGAGAACTTGGTTTTGTATTAATGGCA
    CTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTATAAAAAA
    GACAATTTCTATATTATTTCAATAGAAATTGTCTTTTTTCACTTATCCAAGAACTTTATG
    TCCCGGACTCATTATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1637

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS00200 [old locus tag: SACOL0036 ]
  • symbol: SACOL_RS00200
  • description: IS5/IS1182 family transposase
  • length: 0
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb:
  • LocateP:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

Accession numbers[edit source | edit]

  • GI:
  • RefSeq:
  • UniProt:

Protein sequence[edit source | edit]

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS00200 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]