From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS02435 [old locus tag: SACOL0481 ]
  • pan locus tag?: SAUPAN002141000
  • symbol: SACOL_RS02435
  • pan gene symbol?: lpl4
  • synonym:
  • product: tandem-type lipoprotein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS02435 [old locus tag: SACOL0481 ]
  • symbol: SACOL_RS02435
  • product: tandem-type lipoprotein
  • replicon: chromosome
  • strand: +
  • coordinates: 483179..483949
  • length: 771
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (483179..483949) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGGGATATTTAAAAAGGTTTGCATTGTACATAAGCGTTATGATTTTAATATTTGCGATA
    GCAGGTTGTGGCAAAGGTAATGAAACAAAAGAAGATTCAAAGGAAGAACAAATCAAAAAG
    AGCTTTGCGAAAACGTTAGATATGTATCCAATTAAGAATCTCGAGGACTTATATGATAAA
    GAAGGATACCGTGATGGCGAATTTAAAAAGGGCGACAAAGGAATGTGGACTATATATACA
    GATTTTGCTAAAGGCAATAAATCAGACGAATTGGATGATGAAGGTATGGTTTTAAATCTG
    GATAGAAATACTCGAACGGCTAAGGGATATTATTTTGTTAAGAAATTTTATGAAAAGGAT
    AAATTACCTGATAGAAAAAATTATAAAGTTGAAATGAAAAATAATAAAATTATCTTATTA
    GACAAGGTAGAAGATCCAAATCTAAAAAAGAGAATAGAAAACTTTAAATTTTTCGGACAA
    TATGCAAATTTTAAGGATTTGGAAAATTACAACAATGGCGACGTGTCAATAAATTGGAAT
    GTTCCAAGTTATGACGTGGAATATAAAATGAGCAATAAAGATGAAAATGTTAAACAATTA
    AGAAGTCGTTATAACATTCCTACTGATAAAGCTCCAATGTTAAAAATGCATATTGACGGG
    GACTTAAAAGGTAGTTCTGTTGGATATAAAAGGTTAGAAATAGATTTTTCAAAAGAAGGT
    AGGGATATTTCAGTCATTGATTATTTAAGTTATAAGCCAGCGAAAAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    771

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS02435 [old locus tag: SACOL0481 ]
  • symbol: SACOL_RS02435
  • description: tandem-type lipoprotein
  • length: 256
  • theoretical pI: 9.37385
  • theoretical MW: 30009.1
  • GRAVY: -0.884766

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 388.6)
  • TheSEED:
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 371.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.366
    • Ymax_pos: 27
    • Cmax: 0.203
    • Cmax_pos: 27
    • Smax: 0.87
    • Smax_pos: 19
    • Smean: 0.541
    • D: 0.435
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

  • GI: 558555774 NCBI
  • RefSeq: WP_023487099 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MGYLKRFALYISVMILIFAIAGCGKGNETKEDSKEEQIKKSFAKTLDMYPIKNLEDLYDKEGYRDGEFKKGDKGMWTIYTDFAKGNKSDELDDEGMVLNLDRNTRTAKGYYFVKKFYEKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANFKDLENYNNGDVSINWNVPSYDVEYKMSNKDENVKQLRSRYNIPTDKAPMLKMHIDGDLKGSSVGYKRLEIDFSKEGRDISVIDYLSYKPAKK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS02435 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]