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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS07655 [old locus tag: SACOL1503 ]
  • pan locus tag?: SAUPAN003923000
  • symbol: SACOL_RS07655
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS07655 [old locus tag: SACOL1503 ]
  • symbol: SACOL_RS07655
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1543426..1544529
  • length: 1104
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1543426..1544529) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGCCACAAGGTTTGGAAGTATTCCGCGTGTTATATCACAAATATCCAGACGAAAGTGAA
    TTGCTGATTTATTTTATTGAAGGTTTAATGTCTGAAAATCAAACTGACGAAGCGTTAGAA
    TATTTAAGTTATGTTGAACCATCACCTGAAAAGTTGATGTTAGAAGCAGATTTATATCAA
    CAAATTAATATGATGGAAGTTGCTATTGATAAATTACAAGAAGCACTTGAACTAGAGCCA
    AATGATCCAATAATCCATTTTGCATTGGCTGAAATGTTATATTATGATGGTCAATATTTA
    CGTGCTACCTCTGAATACGAAACCGTTTTAGAAACTGGTGAATATCAAGTTAATGGTGTA
    AACTTATTCTCTCGTATGGCAGATTGTAGTTTACAAAGTGGTAACTATAGTGATGCGATT
    CGCTTATACGATGAAATTAATGAAGATGAAATGACTTCAGAAGATTATCTCAAAAAAGCC
    ATTTCTTACGATAAAAATGACATCACTCAAGAAGCAATTAAAATAATGACTACATTACTT
    TCTAAAGATCCTGATTATATTCAAGGCTACTTGTATTTACAATCATTATATGAAAATGAA
    AAAAATTATCCAGATGCCATTGAAACGGGTAAAGAAGGATTACGACTAAGTCAATTTTAT
    AAAGAGTTAATGTATACAACTGGATGTTTGGAAATAGAACACGGCGATGCTAATGAAGGT
    GTATTATTGTTAAAACAAGCATTAGAGGTTGATAATGCTTACCAAGAACCTTTATTGATT
    TTAAGCGATTTATATCGTAATGAAGAAGATTATGAAGCAATCATTGAATTATTAACATAT
    GTAGATGAAGAAGATTTGGATCCTACATTCATGTGGCATTTAGCGTTCGCCTATGGTCAA
    GAAGAGCGAGATAAAGAAGCTCAACATTTCTTTGAATTAGCATATCCAACGATGAAAACA
    AATATTGATTTTATGAGTGATTATTATTTCTATTTAATTGAAATTGGTCAAAAAGAACAA
    GCAATTACTATTTTAAATCAATTGTTGGAACTAGAGCCAAGTAACGAAAATTGGCATGAC
    GAATTATCAAGATTGCAATCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1104

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS07655 [old locus tag: SACOL1503 ]
  • symbol: SACOL_RS07655
  • description: hypothetical protein
  • length: 367
  • theoretical pI: 3.81747
  • theoretical MW: 43020.7
  • GRAVY: -0.46921

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    putative PEP-CTERM system TPR-repeat lipoprotein (TIGR02917; HMM-score: 73.4)
    type IV pilus biogenesis/stability protein PilW (TIGR02521; HMM-score: 46.3)
    type III secretion low calcium response chaperone LcrH/SycD (TIGR02552; HMM-score: 34.5)
    poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (TIGR03939; HMM-score: 20.5)
    Unknown functionGeneralheme biosynthesis-associated TPR protein (TIGR00540; HMM-score: 19.6)
    tol-pal system protein YbgF (TIGR02795; HMM-score: 19.1)
    pentatricopeptide repeat domain (TIGR00756; HMM-score: 13.7)
    FimV C-terminal domain (TIGR03504; HMM-score: 11.9)
  • TheSEED:
  • PFAM:
    TPR (CL0020) TPR_19; Tetratricopeptide repeat (PF14559; HMM-score: 78.9)
    TPR_2; Tetratricopeptide repeat (PF07719; HMM-score: 67.1)
    TPR_14; Tetratricopeptide repeat (PF13428; HMM-score: 41.1)
    TPR_16; Tetratricopeptide repeat (PF13432; HMM-score: 36.2)
    TPR_7; Tetratricopeptide repeat (PF13176; HMM-score: 34.2)
    TPR_11; TPR repeat (PF13414; HMM-score: 33.1)
    TPR_6; Tetratricopeptide repeat (PF13174; HMM-score: 32.4)
    TPR_15; Tetratricopeptide repeat (PF13429; HMM-score: 31.5)
    TPR_12; Tetratricopeptide repeat (PF13424; HMM-score: 28.9)
    TPR_8; Tetratricopeptide repeat (PF13181; HMM-score: 26.2)
    ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3 (PF12895; HMM-score: 26.2)
    BTAD; Bacterial transcriptional activator domain (PF03704; HMM-score: 24.7)
    TPR_20; Tetratricopeptide repeat (PF14561; HMM-score: 22.2)
    TPR_9; Tetratricopeptide repeat (PF13371; HMM-score: 20.9)
    TPR_1; Tetratricopeptide repeat (PF00515; HMM-score: 20.1)
    TPR_17; Tetratricopeptide repeat (PF13431; HMM-score: 19)
    SGNH_hydrolase (CL0264) DUF4886; Domain of unknown function (DUF4886) (PF16227; HMM-score: 16.3)
    TPR (CL0020) SNAP; Soluble NSF attachment protein, SNAP (PF14938; HMM-score: 15.4)
    no clan definedMIT; MIT (microtubule interacting and transport) domain (PF04212; HMM-score: 14)
    TPR (CL0020) PPR; PPR repeat (PF01535; HMM-score: 13.9)
    CuAO_N2_N3 (CL0047) DUF1965; Domain of unknown function (DUF1965) (PF09248; HMM-score: 11.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.122
    • Ymax_pos: 39
    • Cmax: 0.147
    • Cmax_pos: 39
    • Smax: 0.151
    • Smax_pos: 37
    • Smean: 0.072
    • D: 0.102
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_011443634 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSYVEPSPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVNGVNLFSRMADCSLQSGNYSDAIRLYDEINEDEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENWHDELSRLQS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS07655 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]