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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08390 [old locus tag: SACOL1645 ]
  • pan locus tag?: SAUPAN004175000
  • symbol: SACOL_RS08390
  • pan gene symbol?: comEB
  • synonym:
  • product: ComE operon protein 2

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS08390 [old locus tag: SACOL1645 ]
  • symbol: SACOL_RS08390
  • product: ComE operon protein 2
  • replicon: chromosome
  • strand: -
  • coordinates: 1677599..1678060
  • length: 462
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1677599..1678060) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    TTGGAAAGAATCAAATGGGAAGAATATTTTATGGCACAAAGTCATTTGCTAGCATTACGT
    TCAACTTGTCAAAGATTATCTGTAGGTGCAACGATTGTTAAGGATAATCGTATTATTGCT
    GGTGGTTATAATGGCTCTGTAGCTGGCGAGGTGCATTGTATAGATGAAGGATGTTTAATT
    GAAGATGGACATTGTATCAGAACGATACATGCAGAAATGAATGCTTTATTACAATGTGCA
    AAACAAGGTGTATCTACTGAAGGTGCAACAATCTATGTTACTCATTTTCCATGCCTAAAT
    TGTACAAAGTCAATTATTCAAGCAGGTATAAAGCGTATCTACTATGCAGAAGATTATCAT
    AACCATGAATATGCAACTAAATTACTCAAACAATCTGGTATTGAATTTAAAAAAATTCCA
    TTTTCACCAGAATATGTTGCTAAATATCTGACTAAAGGTTAA
    60
    120
    180
    240
    300
    360
    420
    462

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS08390 [old locus tag: SACOL1645 ]
  • symbol: SACOL_RS08390
  • description: ComE operon protein 2
  • length: 153
  • theoretical pI: 7.79403
  • theoretical MW: 17175.7
  • GRAVY: -0.164706

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    ComE operon protein 2 (TIGR02571; HMM-score: 292.6)
    MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersRiboflavin, FMN, and FADriboflavin biosynthesis protein RibD (TIGR00326; EC 1.1.1.193,3.5.4.26; HMM-score: 38.1)
  • TheSEED:
  • PFAM:
    CDA (CL0109) dCMP_cyt_deam_1; Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383; HMM-score: 106)
    MafB19-deam; MafB19-like deaminase (PF14437; HMM-score: 70.6)
    Bd3614-deam; Bd3614-like deaminase (PF14439; HMM-score: 14.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors: Zn2+
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.149
    • Ymax_pos: 36
    • Cmax: 0.116
    • Cmax_pos: 30
    • Smax: 0.289
    • Smax_pos: 30
    • Smean: 0.146
    • D: 0.148
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446361838 NCBI
  • RefSeq: WP_000439693 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS08390 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]