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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS10615 [old locus tag: SACOL2034 ]
  • pan locus tag?: SAUPAN005290000
  • symbol: SACOL_RS10615
  • pan gene symbol?:
  • synonym:
  • product: YeeE/YedE family protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS10615 [old locus tag: SACOL2034 ]
  • symbol: SACOL_RS10615
  • product: YeeE/YedE family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2091726..2092754
  • length: 1029
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2091726..2092754) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGCAAAGAACAAGATTTTGTTTAACAGGTGGCTTTCGAGATATGTATGTGCAAAAGAAT
    AATAAGATGTTCTATGCATTATTAATCGCTATTACTATTCAAAGTATAGGATTATTGATT
    TTGACGGCAACAGATATTTTACAAATTCCTGCACATAGTTTTCCAATATTGGGAACAATT
    ATAGGTTCTTTTATTTTTGGAATTGGAATAGTATTGGCTGGAGGATGTGCAACAGGTACT
    TGGTATCGCGCTGGTGAAGGGCTAATTGGTAGTTGGATTGCATTAGTATTATATGCTGTT
    ACTGCAGCAATCACTAAAACAGGGATTTTAAAGCCAGTAATGGATAAAATTAATCAACCA
    ACGAATGTAAATAGTGATATGTCTCAAACAACTGGCATTCCGTTTTGGGGATTAGTCGTT
    ATATTAACTATAATCACCATTTTTCTAGTTGTAAGAACACTCAATAATAAGAAAGTTCGA
    GTTGCTGTTCCAAAACTAAAGCAACGTTATACAGGTATTAGATATTACCTTTTCGAAAAA
    CGATACCATCCATTTATTGCAGCAATTGTAATTGGACTTATCGCACTCTTAGCTTGGCCA
    ATGAGTGCATCAACTGGAAGAAATGACGGTTTAGGTATAACAACGCCTTCAGCAAATTTA
    GTACACTTTTTGATTACAGGTGAAACTAAATTTATTGATTGGGGTGTCTTTTTAGTTCTA
    GGAATTTTCATTGGTTCATATATTGCAGCTAGAGGATCAAGAGAATTTAAATGGCGATTG
    CCAGACAAGATTACAATACGAAACAGTGCGATTGGTGGCATATGTATGGGATTTGGTGCG
    TCAGTTGCTGGTGGTTGTTCTATCGGTAACGGTTTGGTTGAAACGGCAACGATGACTTGG
    CAAGGATGGATTGCGCTAGCATCGATGATAGTTGGTGTATGGACAATGAGTCATTTTATC
    TTTGTTCGTCCAATGAAAAAAGTACACCAACAATCTGCAAAGGTTAAACAGCAAACGCAA
    ATAGTATAG
    60
    120
    180
    240
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    360
    420
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    540
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    1020
    1029

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS10615 [old locus tag: SACOL2034 ]
  • symbol: SACOL_RS10615
  • description: YeeE/YedE family protein
  • length: 342
  • theoretical pI: 10.7059
  • theoretical MW: 37439.2
  • GRAVY: 0.528947

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    putative selenium metabolism protein, YedE family (TIGR04112; HMM-score: 44)
    Hypothetical proteinsConservedTIGR00701 family protein (TIGR00701; HMM-score: 11.3)
    tandem five-TM protein (TIGR01218; HMM-score: 8.3)
  • TheSEED:
  • PFAM:
    no clan definedSulf_transp; Sulphur transport (PF04143; HMM-score: 332.7)
    DUF2070; Predicted membrane protein (DUF2070) (PF09843; HMM-score: 5.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.119
    • Ymax_pos: 43
    • Cmax: 0.122
    • Cmax_pos: 54
    • Smax: 0.175
    • Smax_pos: 1
    • Smean: 0.106
    • D: 0.114
  • predicted transmembrane helices (TMHMM): 8

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_072353927 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MQRTRFCLTGGFRDMYVQKNNKMFYALLIAITIQSIGLLILTATDILQIPAHSFPILGTIIGSFIFGIGIVLAGGCATGTWYRAGEGLIGSWIALVLYAVTAAITKTGILKPVMDKINQPTNVNSDMSQTTGIPFWGLVVILTIITIFLVVRTLNNKKVRVAVPKLKQRYTGIRYYLFEKRYHPFIAAIVIGLIALLAWPMSASTGRNDGLGITTPSANLVHFLITGETKFIDWGVFLVLGIFIGSYIAARGSREFKWRLPDKITIRNSAIGGICMGFGASVAGGCSIGNGLVETATMTWQGWIALASMIVGVWTMSHFIFVRPMKKVHQQSAKVKQQTQIV

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS10615 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]