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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS11470 [old locus tag: SACOL2180 ]
  • pan locus tag?: SAUPAN005585000
  • symbol: SACOL_RS11470
  • pan gene symbol?: lacG
  • synonym:
  • product: 6-phospho-beta-galactosidase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS11470 [old locus tag: SACOL2180 ]
  • symbol: SACOL_RS11470
  • product: 6-phospho-beta-galactosidase
  • replicon: chromosome
  • strand: -
  • coordinates: 2262504..2263916
  • length: 1413
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (2262504..2263916) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    ATGACTAAAACATTACCTGAAGATTTTATTTTTGGTGGAGCAACAGCAGCATATCAAGCA
    GAAGGTGCGACAAATACGGATGGTAAAGGTCGCGTAGCATGGGATACGTATTTAGAAGAA
    AACTATTGGTACACTGCAGAACCAGCGAGTGATTTTTATGACAGATATCCAGTGGATTTA
    GAATTAAGTGAAAAATTCGGTGTTAATGGTATCCGAATTTCAATTGCATGGTCTCGTATC
    TTCCCAAATGGATATGGCGAAGTTAACCCTAAAGGTGTTGAGTATTACCATAAGTTATTT
    GCAGAGTGTCATAAACGTCATGTTGAACCATTTGTAACATTGCATCATTTTGATACACCA
    GAAGTGTTACACAAAGATGGCGATTTTCTAAATCGTAAAACGATTGACTACTTTGTAGAT
    TATGCTGAATATTGTTTTAAAGAATTCCCAGAAGTAAAATATTGGACTACATTCAATGAA
    ATTGGACCTATTGGTGATGGTCAATATTTAGTAGGTAAATTCCCTCCAGGTATTAAATAT
    GATTTTGAAAAAGTATTCCAATCACATCATAACATGATGGTGGCTCATGCTAGAGCAGTA
    AAATTATTTAAAGATGGCGGATACAAAGGAGAAATTGGTGTTGTACACGCATTGCCAACA
    AAATATCCGTTCGATCCATCAAATCCTGAAGATGTTCGTGCAGCAGAATTAGAAGATATC
    ATCCATAATAAATTCATCTTAGATGCAACATATTTAGGTAAGTATTCTCGTGAAACGATG
    GAAGGTGTGCAACATATCTTATCTGTTAATGGCGGTAAATTAAACATTACAGATGAAGAT
    TATGCCATTTTAGATGCAGCCAAAGATTTAAACGACTTCTTAGGTATCAATTACTACATG
    AGTGATTGGATGAGAGGTTACGATGGAGAATCTGAAATCACGCATAATGCGACAGGTGAT
    AAAGGCGGTTCTAAATACCAACTTAAAGGTGTCGGACAACGTGAATTTGATGTCGACGTA
    CCTCGCACAGACTGGGACTGGATGATCTATCCTCAAGGTTTATATGATCAAATCATGCGT
    GTTGTTAAAGATTATCCTAACTATCATAAGATTTATATCACTGAAAATGGTTTAGGATAT
    AAAGATGAATTTATTGAATCTGAAAAAACAGTTCATGATGATGCACGTATTGATTATGTA
    AGACAACATTTGAACGTTATTGCAGATGCTATTATAGATGGTGCAAATGTTAAAGGTTAC
    TTTATTTGGTCATTAATGGATGTGTTCTCTTGGTCAAATGGTTATGAAAAACGATATGGT
    TTATTCTATGTCGATTTTGAGACTCAAGAACGTTATCCTAAGAAAAGTGCTTATTGGTAC
    AAAGAGTTAGCCGAAACAAAAGAAATTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
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    840
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    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1413

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS11470 [old locus tag: SACOL2180 ]
  • symbol: SACOL_RS11470
  • description: 6-phospho-beta-galactosidase
  • length: 470
  • theoretical pI: 4.86622
  • theoretical MW: 54550.6
  • GRAVY: -0.577447

Function[edit source | edit]

  • reaction:
    EC 3.2.1.85?  ExPASy
    6-phospho-beta-galactosidaseA 6-phospho-beta-D-galactoside + H2O = 6-phospho-D-galactose + an alcohol
  • TIGRFAM:
    MetabolismEnergy metabolismBiosynthesis and degradation of polysaccharides6-phospho-beta-galactosidase (TIGR01233; EC 3.2.1.85; HMM-score: 865.5)
    beta-galactosidase (TIGR03356; HMM-score: 388.7)
  • TheSEED:
  • PFAM:
    Glyco_hydro_tim (CL0058) Glyco_hydro_1; Glycosyl hydrolase family 1 (PF00232; HMM-score: 583.9)
    C2 (CL0154) IcmF_C; Type VI secretion protein IcmF C-terminal (PF06744; HMM-score: 12.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.152
    • Ymax_pos: 23
    • Cmax: 0.202
    • Cmax_pos: 23
    • Smax: 0.186
    • Smax_pos: 16
    • Smean: 0.106
    • D: 0.134
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446091355 NCBI
  • RefSeq: WP_000169210 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTKTLPEDFIFGGATAAYQAEGATNTDGKGRVAWDTYLEENYWYTAEPASDFYDRYPVDLELSEKFGVNGIRISIAWSRIFPNGYGEVNPKGVEYYHKLFAECHKRHVEPFVTLHHFDTPEVLHKDGDFLNRKTIDYFVDYAEYCFKEFPEVKYWTTFNEIGPIGDGQYLVGKFPPGIKYDFEKVFQSHHNMMVAHARAVKLFKDGGYKGEIGVVHALPTKYPFDPSNPEDVRAAELEDIIHNKFILDATYLGKYSRETMEGVQHILSVNGGKLNITDEDYAILDAAKDLNDFLGINYYMSDWMRGYDGESEITHNATGDKGGSKYQLKGVGQREFDVDVPRTDWDWMIYPQGLYDQIMRVVKDYPNYHKIYITENGLGYKDEFIESEKTVHDDARIDYVRQHLNVIADAIIDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKELAETKEIK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS11470 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]