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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01879
  • pan locus tag?: SAUPAN004448000
  • symbol: SAOUHSC_01879
  • pan gene symbol?: rot
  • synonym:
  • product: virulence factor regulator protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_01879
  • symbol: SAOUHSC_01879
  • product: virulence factor regulator protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1794447..1794848
  • length: 402
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAAAAGTAAATAACGACACTGTATTTGGAATTTTGCAATTAGAAACACTTTTGGGT
    GACATTAACTCAATTTTCAGCGAGATTGAAAGCGAATACAAAATGTCTAGAGAAGAAATT
    TTAATTTTACTAACTTTATGGCAAAAAGGTTCTATGACGCTTAAAGAAATGGACAGATTT
    GTTGAAGTTAAACCGTATAAGCGTACGAGAACGTATAATAATTTAGTTGAATTAGAATGG
    ATTTACAAAGAGCGTCCTGTTGACGATGAAAGAACAGTTATTATTCATTTCAATGAAAAG
    TTACAACAAGAGAAAGTAGAGTTGTTGAATTTCATCAGTGATGCGATTGCAAGTAGAGCA
    ACAGCAATGCAAAATAGTTTAAACGCAATTATTGCTGTGTAA
    60
    120
    180
    240
    300
    360
    402

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_01879
  • symbol: SAOUHSC_01879
  • description: virulence factor regulator protein
  • length: 133
  • theoretical pI: 4.83329
  • theoretical MW: 15599.9
  • GRAVY: -0.240602

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Signal transductionRegulatory functionsDNA interactionsstaphylococcal accessory regulator family (TIGR01889; HMM-score: 77.1)
  • TheSEED:  
    Repressor of toxins Rot 
  • PFAM:
    HTH (CL0123) MarR; MarR family (PF01047; HMM-score: 32.8)
    GBD (CL0202) Lyase_N; Lyase, N terminal (PF09092; HMM-score: 12.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.119
    • Ymax_pos: 28
    • Cmax: 0.127
    • Cmax_pos: 28
    • Smax: 0.15
    • Smax_pos: 4
    • Smean: 0.105
    • D: 0.114
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKKVNNDTVFGILQLETLLGDINSIFSEIESEYKMSREEILILLTLWQKGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPVDDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAIIAV

Experimental data[edit source | edit]

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]