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NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_03018
  • pan locus tag?: SAUPAN006439000
  • symbol: SAOUHSC_03018
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_03018
  • symbol: SAOUHSC_03018
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2791188..2792021
  • length: 834
  • essential: no DEG other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAATCAATATAATACTATAGGTTTTCACCCGGGAAATAGTCGTATTCATCAATTAAAT
    GCGACTGTTAAACTTTTATTCTTATTAGTTGTTTCTATTTCTGCAATGGTGACTTATGAC
    ACAAGATATTTAATTTTAATTAGTGCTTCATCTATTTTATTGGTCAAATATGCTCATATT
    GAATGGAAACAAGTTCGCTTTGTTGTTAAATTCATTCTGTTTTTCACAATATTAAATATT
    ATTGCCGTGTACATATTTGACCCTGAATATGGTGTGAAGATTTATAATCAGCGTACAGAG
    TTAGTCAATGGTATTGGTCGATTTACGCTAACATCACAGGAATTATTCTATCTTTTTAAT
    CTAATATTAAAATATATTAGTACAGTTCCTTTAGCGTTAATATTTTTATTCACAACGAAT
    CCGAGTCATTTTGCTGCAAGTTTAAATCAGCTAGGTGTGAATTATAAAATCAGTTACGCA
    GTCTCACTAGCATTAAGGTATATTCCAGATATTCAAGAAACATATTTTAATATTTCACAA
    GCGCAACAAGCAAGAGGATATGATAATTCGAAAAAAGCAAAATTTACTAGCCGTGTTAAA
    GGTATCAAACGCATTGTGTTACCTTTAATATTTTCTAGTATCGAAAGAATTGACACTATT
    AGTACTGCTATGGAGTTAAGACAATTCGGACAGTATAAAAGGAGAACCTGGTACGTCAAA
    AAACAATTAAAAAAAGATGATTATGTTGTTTTGTGTTTGACGTTAATACTTCTGATGTTA
    GTAGTTACATTATTCTTTTTAAATAATAGTCGATATTTCAACCCGTGGCATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    834

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_03018
  • symbol: SAOUHSC_03018
  • description: hypothetical protein
  • length: 277
  • theoretical pI: 10.2899
  • theoretical MW: 32323.8
  • GRAVY: 0.280866

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundscobalt ECF transporter T component CbiQ (TIGR02454; HMM-score: 74.6)
  • TheSEED:  
    Amino Acids and DerivativesLysine, threonine, methionine, and cysteineMethionine Biosynthesis Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter 
    Membrane TransportMembrane Transport - no subcategoryECF class transporters Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter 
  • PFAM:
    no clan definedCbiQ; Cobalt transport protein (PF02361; HMM-score: 106.7)
    ABC-2 (CL0181) PDR_CDR; CDR ABC transporter (PF06422; HMM-score: 10.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.139
    • Ymax_pos: 27
    • Cmax: 0.136
    • Cmax_pos: 61
    • Smax: 0.256
    • Smax_pos: 24
    • Smean: 0.154
    • D: 0.145
  • predicted transmembrane helices (TMHMM): 5

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MNQYNTIGFHPGNSRIHQLNATVKLLFLLVVSISAMVTYDTRYLILISASSILLVKYAHIEWKQVRFVVKFILFFTILNIIAVYIFDPEYGVKIYNQRTELVNGIGRFTLTSQELFYLFNLILKYISTVPLALIFLFTTNPSHFAASLNQLGVNYKISYAVSLALRYIPDIQETYFNISQAQQARGYDNSKKAKFTSRVKGIKRIVLPLIFSSIERIDTISTAMELRQFGQYKRRTWYVKKQLKKDDYVVLCLTLILLMLVVTLFFLNNSRYFNPWH

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]