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Summary[edit source | edit]

  • pan ID?: SAUPAN001978000
  • symbol?:
  • description?: putative lipoprotein

      descriptions from strain specific annotations:

    • putative lipoprotein
    • Lipoprotein, putative
  • strand?: -
  • coordinates?: 2445616..2446242
  • synteny block?: BlockID0013310
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0377
    08BA02176:
    C248_0434
    11819-97:
    MS7_0368
    71193:
    ST398NM01_0455
    ECT-R 2:
    ECTR2_338
    ED133:
    SAOV_0401c
    ED98:
    SAAV_0345
    HO 5096 0412:
    SAEMRSA15_03310
    JH1:
    SaurJH1_0437
    JH9:
    SaurJH9_0426
    JKD6008:
    SAA6008_00378
    JKD6159:
    SAA6159_00353
    LGA251:
    SARLGA251_03390
    M013:
    M013TW_0358
    MRSA252:
    SAR0396
    MSHR1132:
    SAMSHR1132_03500
    MSSA476:
    SAS0355
    Mu3:
    SAHV_0375
    Mu50:
    SAV0378
    MW2:
    MW0354
    RF122:
    SAB0328c
    ST398:
    SAPIG0455
    T0131:
    SAT0131_00411
    TCH60:
    HMPREF0772_10117
    TW20:
    SATW20_04450
    USA300_TCH1516:
    USA300HOU_0401
    VC40:
    SAVC_01645

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDI
    N315            MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDI
    NCTC8325        MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDI
    Newman          MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDI
    USA300_FPR3757  MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDI
                    *************:**********************************************

    COL             SDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDL
    N315            SDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDL
    NCTC8325        SDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDL
    Newman          SDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDL
    USA300_FPR3757  SDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDL
                    ************************************************************

    COL             HFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKY
    N315            HFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKY
    NCTC8325        HFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKY
    Newman          HFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKY
    USA300_FPR3757  HFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKY
                    ************************************************************

    COL             AGDVNKKQQDKIKDFLKSKGIKSDVIDK
    N315            AGDVNKKQQDKIKDFLKSKGIKSDVIDK
    NCTC8325        AGDVNKKQQDKIKDFLKSKGIKSDVIDK
    Newman          AGDVNKKQQDKIKDFLKSKGIKSDVIDK
    USA300_FPR3757  AGDVNKKQQDKIKDFLKSKGIKSDVIDK
                    ****************************