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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002231000
- symbol?: ksgA
- synonym:
- description?: dimethyladenosine transferase
- dimethyladenosine transferase
- ribosomal RNA small subunit methyltransferase A
- 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
- KsgA/Dim1 family 16S ribosomal RNA methyltransferase
- ribosomal RNA adenine dimethylase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2739870..2740781
- synteny block?: BlockID0015300
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0468
08BA02176:
C248_0548
11819-97:
MS7_0470 (ksgA)
6850:
RSAU_000430 (ksgA)
71193:
ST398NM01_0559
ECT-R 2:
ECTR2_433 (ksgA)
ED133:
SAOV_0515 (ksgA)
ED98:
SAAV_0440 (ksgA)
HO 5096 0412:
SAEMRSA15_04190
JH1:
SaurJH1_0527 (ksgA)
JH9:
SaurJH9_0514 (ksgA)
JKD6008:
SAA6008_00497 (ksgA)
JKD6159:
SAA6159_00444 (ksgA)
LGA251:
SARLGA251_04270
M013:
M013TW_0464
MRSA252:
SAR0494 (ksgA)
MSHR1132:
SAMSHR1132_04370
MSSA476:
SAS0450 (ksgA)
Mu3:
SAHV_0490 (ksgA)
Mu50:
SAV0493 (ksgA)
MW2:
MW0448 (ksgA)
RF122:
SAB0442 (ksgA)
ST398:
SAPIG0559 (ksgA)
T0131:
SAT0131_00538
TCH60:
HMPREF0772_10027 (ksgA)
TW20:
SATW20_05610
USA300_TCH1516:
USA300HOU_0493 (ksgA)
VC40:
SAVC_02050 (ksgA)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPG
N315 MLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPG
NCTC8325 MLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPG
Newman MLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPG
USA300_FPR3757 MLDNKDIATPSRTRALLDKYGFNFKKSLGQNFLIDVNIINNIIDASDIDAQTGVIEIGPG
************************************************************
COL MGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAVENHLQD
N315 MGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAVENHLQD
NCTC8325 MGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAVENHLQD
Newman IGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAVENHLQD
USA300_FPR3757 MGSLTEQLARHAKRVLAFEIDQRLIPVLNDTLSPYDNVTVINEDILKANIKEAVENHLQD
:***********************************************************
COL CEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERLNAEVGSKAYGSLSIVV
N315 CEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERLNAEVGSKAYGSLSIVV
NCTC8325 CEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERLNAEVGSKAYGSLSIVV
Newman CEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERLNAEVGSKAYGSLSIVV
USA300_FPR3757 CEKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERLNAEVGSKAYGSLSIVV
************************************************************
COL QYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKT
N315 QYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKT
NCTC8325 QYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKT
Newman QYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKT
USA300_FPR3757 QYYTETSKVLTVPKSVFMPPPNVDSIVVKLMQRTEPLVTVDNEEAFFKLAKAAFAQRRKT
************************************************************
COL INNNYQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYEEKKKFPQLEN
N315 INNNYQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYEEKKKFPQLEN
NCTC8325 INNNYQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYEEKKKFPQLEN
Newman INNNYQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYEEKKKFPQLEN
USA300_FPR3757 INNNYQNYFKDGKQHKEVILQWLEQAGIDPRRRGETLSIQDFAKLYEEKKKFPQLEN
*********************************************************