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Summary[edit source | edit]

  • pan ID?: SAUPAN003418000
  • symbol?: hla
  • description?: alpha-hemolysin

      descriptions from strain specific annotations:

    • alpha-hemolysin
    • alpha-hemolysin precursor
    • alpha-hemolysin (Alpha-toxin) (Alpha-HL)
    • alpha-hemolysin precursor (pseudogene)
    • beta-channel forming cytolysin
  • strand?: -
  • coordinates?: 3767663..3768622
  • synteny block?: BlockID0024990
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1173 (hlY)
    N315:
    NCTC8325:
    Newman:
    NWMN_1073 (hla)
    USA300_FPR3757:
    04-02981:
    SA2981_1119
    08BA02176:
    C248_1190
    11819-97:
    MS7_1118 (hly)
    71193:
    ST398NM01_1158
    ECT-R 2:
    ECTR2_1018
    ED133:
    SAOV_1161c (hla)
    ED98:
    SAAV_1131 (hlY)
    HO 5096 0412:
    SAEMRSA15_09940 (hla)
    JH1:
    SaurJH1_1246
    JH9:
    SaurJH9_1222
    JKD6008:
    SAA6008_01115 (hlY)
    JKD6159:
    SAA6159_01014 (hlY)
    LGA251:
    SARLGA251_10730 (hla)
    M013:
    M013TW_1094
    MRSA252:
    SAR1136 (hla)
    MSHR1132:
    SAMSHR1132_10050
    MSSA476:
    SAS1097
    Mu3:
    SAHV_1153
    Mu50:
    SAV1163
    MW2:
    MW1044
    RF122:
    SAB1027c (hla)
    ST398:
    SAPIG1158
    T0131:
    SAT0131_01205
    TCH60:
    HMPREF0772_12071 (hly)
    TW20:
    SATW20_11550 (hla)
    USA300_TCH1516:
    USA300HOU_1099 (hly)
    VC40:
    SAVC_04965

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
    N315            MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
    NCTC8325        MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
    Newman          MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
    USA300_FPR3757  MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
                    ************************************************************

    COL             HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
    N315            HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
    NCTC8325        HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
    Newman          HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
    USA300_FPR3757  HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
                    ************************************************************

    COL             VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
    N315            VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
    NCTC8325        VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
    Newman          VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
    USA300_FPR3757  VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
                    ************************************************************

    COL             TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPN
    N315            TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN
    NCTC8325        TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPN
    Newman          TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPN
    USA300_FPR3757  TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPN
                    *****************************************************:******

    COL             KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
    N315            KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
    NCTC8325        KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
    Newman          KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
    USA300_FPR3757  KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
                    ************************************************************

    COL             IDRSSERYKIDWEKEEMTN
    N315            TDRSSERYKIDWEKEEMTN
    NCTC8325        IDRSSERYKIDWEKEEMTN
    Newman          IDRSSERYKIDWEKEEMTN
    USA300_FPR3757  IDRSSERYKIDWEKEEMTN
                     ******************