From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN003481000
  • symbol?: pyrC
  • description?: dihydroorotase

      descriptions from strain specific annotations:

    • dihydroorotase
    • putative dihydroorotase
    • dihydroorotase (DHOase)
  • strand?: +
  • coordinates?: 3820479..3821756
  • synteny block?: BlockID0025600
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1213 (pyrC)
    N315:
    SA1044 (pyrC)
    NCTC8325:
    Newman:
    NWMN_1112 (pyrC)
    USA300_FPR3757:
    04-02981:
    SA2981_1159 (pyrC)
    08BA02176:
    C248_1230 (pyrC)
    11819-97:
    MS7_1158 (pyrC)
    71193:
    ST398NM01_1198
    ECT-R 2:
    ECTR2_1056 (pyrC)
    ED133:
    SAOV_1204
    ED98:
    SAAV_1172 (pyrC)
    HO 5096 0412:
    SAEMRSA15_10340 (pyrC)
    JH1:
    SaurJH1_1285 (pyrC)
    JH9:
    SaurJH9_1260 (pyrC)
    JKD6008:
    SAA6008_01155 (pyrC)
    JKD6159:
    SAA6159_01054 (pyrC)
    LGA251:
    SARLGA251_11120 (pyrC)
    M013:
    M013TW_1136
    MRSA252:
    SAR1177 (pyrC)
    MSHR1132:
    SAMSHR1132_10420
    MSSA476:
    SAS1135 (pyrC)
    Mu3:
    SAHV_1191 (pyrC)
    Mu50:
    SAV1201 (pyrC)
    MW2:
    MW1084 (pyrC)
    RF122:
    SAB1065 (pyrC)
    ST398:
    SAPIG1198
    T0131:
    SAT0131_01249
    TCH60:
    HMPREF0772_12031 (pyrC)
    TW20:
    SATW20_11950 (pyrC)
    USA300_TCH1516:
    USA300HOU_1139 (pyrC)
    VC40:
    SAVC_05170 (pyrC)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVH
    N315            MKLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVH
    NCTC8325        MKLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVH
    Newman          MKLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVH
    USA300_FPR3757  MKLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVH
                    ************************************************************

    COL             LREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLP
    N315            LREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLP
    NCTC8325        LREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLP
    Newman          LREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLP
    USA300_FPR3757  LREPGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLP
                    ************************************************************

    COL             YASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCED
    N315            YASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCED
    NCTC8325        YASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCED
    Newman          YASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCED
    USA300_FPR3757  YASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAIVAHCED
                    ************************************************************

    COL             NSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVI
    N315            NSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVI
    NCTC8325        NSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVI
    Newman          NSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVI
    USA300_FPR3757  NSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVI
                    ************************************************************

    COL             RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCI
    N315            RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCI
    NCTC8325        RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCI
    Newman          RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCI
    USA300_FPR3757  RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCI
                    ************************************************************

    COL             ATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETF
    N315            ATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETF
    NCTC8325        ATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETF
    Newman          ATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETF
    USA300_FPR3757  ATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETF
                    ************************************************************

    COL             NLEYGTLKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKF
    N315            NLEYGTLKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKF
    NCTC8325        NLEYGTLKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKF
    Newman          NLEYGTLKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKF
    USA300_FPR3757  NLEYGTLKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKF
                    ************************************************************

    COL             EGDK
    N315            EGDK
    NCTC8325        EGDK
    Newman          EGDK
    USA300_FPR3757  EGDK
                    ****