From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN003520000
  • symbol?: rnc
  • description?: ribonuclease III

      descriptions from strain specific annotations:

    • ribonuclease III
    • putative ribonuclease III
    • ribonuclease 3
  • strand?: +
  • coordinates?: 3857683..3858414
  • synteny block?: BlockID0025990
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1248 (rnc)
    N315:
    SA1076 (rnc)
    NCTC8325:
    Newman:
    NWMN_1143 (rnc)
    USA300_FPR3757:
    04-02981:
    SA2981_1191 (rnc)
    08BA02176:
    C248_1264
    11819-97:
    MS7_1191 (rnc)
    71193:
    ST398NM01_1233
    ECT-R 2:
    ECTR2_1089 (rnc)
    ED133:
    SAOV_1236
    ED98:
    SAAV_1206 (rnc)
    HO 5096 0412:
    SAEMRSA15_10660
    JH1:
    SaurJH1_1317 (rnc)
    JH9:
    SaurJH9_1292 (rnc)
    JKD6008:
    SAA6008_01188 (rnc)
    JKD6159:
    SAA6159_01086 (rnc)
    LGA251:
    SARLGA251_11440
    M013:
    M013TW_1171
    MRSA252:
    SAR1209 (rnc)
    MSHR1132:
    SAMSHR1132_10740
    MSSA476:
    SAS1167 (rnc)
    Mu3:
    SAHV_1223 (rnc)
    Mu50:
    SAV1233 (rnc)
    MW2:
    MW1116 (rnc)
    RF122:
    SAB1097 (rnc)
    ST398:
    SAPIG1233 (rnc)
    T0131:
    SAT0131_01283 (ureD)
    TCH60:
    HMPREF0772_11998 (rnc)
    TW20:
    SATW20_12270
    USA300_TCH1516:
    USA300HOU_1170 (rnc)
    VC40:
    SAVC_05330 (rnc)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
    N315            MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
    NCTC8325        MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
    Newman          MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
    USA300_FPR3757  MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
                    ************************************************************

    COL             LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
    N315            LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
    NCTC8325        LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
    Newman          LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
    USA300_FPR3757  LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
                    ************************************************************

    COL             TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
    N315            TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
    NCTC8325        TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
    Newman          TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
    USA300_FPR3757  TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
                    ************************************************************

    COL             VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
    N315            VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
    NCTC8325        VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
    Newman          VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
    USA300_FPR3757  VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
                    ************************************************************

    COL             QIK
    N315            QIK
    NCTC8325        QIK
    Newman          QIK
    USA300_FPR3757  QIK
                    ***