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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003520000
- symbol?: rnc
- synonym:
- description?: ribonuclease III
- ribonuclease III
- ribonuclease 3
- putative ribonuclease III
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3857683..3858414
- synteny block?: BlockID0025990
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1191 (rnc)
08BA02176:
C248_1264
11819-97:
MS7_1191 (rnc)
6850:
RSAU_001115 (rnc)
71193:
ST398NM01_1233
ECT-R 2:
ECTR2_1089 (rnc)
ED133:
SAOV_1236
ED98:
SAAV_1206 (rnc)
HO 5096 0412:
SAEMRSA15_10660
JH1:
SaurJH1_1317 (rnc)
JH9:
SaurJH9_1292 (rnc)
JKD6008:
SAA6008_01188 (rnc)
JKD6159:
SAA6159_01086 (rnc)
LGA251:
SARLGA251_11440
M013:
M013TW_1171
MRSA252:
SAR1209 (rnc)
MSHR1132:
SAMSHR1132_10740
MSSA476:
SAS1167 (rnc)
Mu3:
SAHV_1223 (rnc)
Mu50:
SAV1233 (rnc)
MW2:
MW1116 (rnc)
RF122:
SAB1097 (rnc)
ST398:
SAPIG1233 (rnc)
T0131:
SAT0131_01283 (ureD)
TCH60:
HMPREF0772_11998 (rnc)
TW20:
SATW20_12270
USA300_TCH1516:
USA300HOU_1170 (rnc)
VC40:
SAVC_05330 (rnc)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
N315 MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
NCTC8325 MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
Newman MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
USA300_FPR3757 MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEF
************************************************************
COL LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
N315 LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
NCTC8325 LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
Newman LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
USA300_FPR3757 LGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEK
************************************************************
COL TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
N315 TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
NCTC8325 TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
Newman TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
USA300_FPR3757 TGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEY
************************************************************
COL VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
N315 VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
NCTC8325 VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
Newman VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
USA300_FPR3757 VHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLK
************************************************************
COL QIK
N315 QIK
NCTC8325 QIK
Newman QIK
USA300_FPR3757 QIK
***