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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003947000
- symbol?: recQ2
- synonym:
- description?: ATP-dependent DNA helicase RecQ
- ATP-dependent DNA helicase RecQ
- ATP-dependent DNA helicase RecQ, putative
- ATP-dependent DNA helicase, RecQ family protein
- ATP-dependent helicase RecQ
- DEAD/DEAH box helicase
- dead/deah box helicase family protein
- RecQ familyATP-dependent DNA helicase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4263071..4264450
- synteny block?: BlockID0029930
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1438 (recQ)
08BA02176:
C248_1522
11819-97:
MS7_1435
6850:
RSAU_001352 (recQ)
71193:
ST398NM01_1481
ECT-R 2:
ECTR2_1333
ED133:
SAOV_1488
ED98:
SAAV_1469 (recQ2)
HO 5096 0412:
SAEMRSA15_13410
JH1:
SaurJH1_1569
JH9:
SaurJH9_1538
JKD6008:
SAA6008_01450 (recQ)
JKD6159:
SAA6159_01345 (recQ)
LGA251:
SARLGA251_13940
M013:
M013TW_1429
MRSA252:
SAR1490
MSHR1132:
SAMSHR1132_13200
MSSA476:
SAS1422
Mu3:
SAHV_1470
Mu50:
SAV1482
MW2:
MW1370
RF122:
SAB1344c
ST398:
SAPIG1481
T0131:
SAT0131_01571 (lpl1nm)
TCH60:
HMPREF0772_11724 (recQ)
TW20:
SATW20_14790
USA300_TCH1516:
USA300HOU_1420 (recQ2)
VC40:
SAVC_06655
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLHDILRNKFGFESFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLII
N315 MLHDILRNKFGFENFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLII
NCTC8325 MLHDILRNKFGFESFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLII
Newman MLHDILRNKFGFESFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLII
USA300_FPR3757 MLHDILRNKFGFESFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLII
*************.**********************************************
COL SPLISLMDDQVMQLKINGEKRVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNF
N315 SPLISLMDDQVMQLKINGEKRVTCIHSGMDEIEKKHNIKCLLHSRFIFLSPEFLLQPSNF
NCTC8325 SPLISLMDDQVMQLKINGEKRVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNF
Newman SPLISLMDDQVMQLKINGEKRVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNF
USA300_FPR3757 SPLISLMDDQVMQLKINGEKRVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNF
***************************************** ******************
COL KLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHFKEAVVLALTATAPPHLQDDL
N315 KLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHFKEAVVLALTATAPPHLQDDL
NCTC8325 KLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHFKEAVVLALTATAPPHLQDDL
Newman KLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHFKEAVVLALTATAPPHLQDDL
USA300_FPR3757 KLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHFKEAVVLALTATAPPHLQDDL
************************************************************
COL TEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
N315 TEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
NCTC8325 TEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
Newman TEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
USA300_FPR3757 TEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
************************************************************
COL AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFH
N315 AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFH
NCTC8325 AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFH
Newman AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFH
USA300_FPR3757 AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFH
************************************************************
COL LSTSPSNYIQEIGRAGRDGELSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLA
N315 LSTSPSNYIQEIGRAGRDGELSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLA
NCTC8325 LSTSPSNYIQEIGRAGRDGELSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLA
Newman LSTSPSNYIQEIGRAGRDGELSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLA
USA300_FPR3757 LSTSPSNYIQEIGRAGRDGELSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLA
************************************************************
COL PDKQAVLTTLQSFYSIGALKQIFKQSFKRKQLGFFRMIGYCKLDQCRRKYLLEFFGEYPP
N315 PDKQDVLTTLHSFYSIGALKQIFKQSFKRKQLGFFRMIGYCKLDQCRRKYLLEFFGEYPP
NCTC8325 PDKQAVLTTLQSFYSIGALKQIFKQSFKRKQLGFFRMIGYCKLDQCRRKYLLEFFGEYPP
Newman PDKQAVLTTLQSFYSIGALKQIFKQSFKRKQLGFFRMIGYCKLDQCRRKYLLEFFGEYPP
USA300_FPR3757 PDKQAVLTTLQSFYSIGALKQIFKQSFKRKQLGFFRMIGYCKLDQCRRKYLLEFFGEYPP
**** *****:*************************************************
COL AQDRCCDNDSNITDIAILNKKKVIRSIGFDEKLQNLFLR
N315 AQDRCCDNDSNITDIVILNKKKVIRSIGFDEKLQNLFLR
NCTC8325 AQDRCCDNDSNITDIAILNKKKVIRSIGFDEKLQNLFLR
Newman AQDRCCDNDSNITDIAILNKKKVIRSIGFDEKLQNLFLR
USA300_FPR3757 AQDRCCDNDSNITDIAILNKKKVIRSIGFDEKLQNLFLR
***************.***********************