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Summary[edit source | edit]

  • pan ID?: SAUPAN004215000
  • symbol?: alaS
  • description?: alanyl-tRNA synthetase

      descriptions from strain specific annotations:

    • alanyl-tRNA synthetase
    • putative alanyl-tRNA synthetase
    • alanine--tRNA ligase
  • strand?: -
  • coordinates?: 4464744..4467308
  • synteny block?: BlockID0032430
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1673 (alaS)
    N315:
    SA1446 (alaS)
    NCTC8325:
    Newman:
    NWMN_1519 (alaS)
    USA300_FPR3757:
    04-02981:
    SA2981_1576 (alaS)
    08BA02176:
    C248_1660 (alaS)
    11819-97:
    MS7_1634 (alaS)
    71193:
    ST398NM01_1682
    ECT-R 2:
    ECTR2_1467 (alaS)
    ED133:
    SAOV_1616
    ED98:
    SAAV_1610 (alaS)
    HO 5096 0412:
    SAEMRSA15_15360 (alaS)
    JH1:
    SaurJH1_1709 (alaS)
    JH9:
    SaurJH9_1675 (alaS)
    JKD6008:
    SAA6008_01588 (alaS)
    JKD6159:
    SAA6159_01551 (alaS)
    LGA251:
    SARLGA251_15210 (alaS)
    M013:
    M013TW_1639
    MRSA252:
    SAR1697 (alaS)
    MSHR1132:
    SAMSHR1132_14550
    MSSA476:
    SAS1554 (alaS)
    Mu3:
    SAHV_1605 (alaS)
    Mu50:
    SAV1618 (alaS)
    MW2:
    MW1568 (alaS)
    RF122:
    SAB1489c (alaS)
    ST398:
    SAPIG1682 (alaS)
    T0131:
    SAT0131_01715
    TCH60:
    HMPREF0772_11523 (alaS)
    TW20:
    SATW20_16130 (alaS)
    USA300_TCH1516:
    USA300HOU_1618 (alaS)
    VC40:
    SAVC_07340 (alaS)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK
    N315            MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK
    NCTC8325        MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK
    Newman          MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK
    USA300_FPR3757  MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKK
                    ************************************************************

    COL             PRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGM
    N315            PRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGM
    NCTC8325        PRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGM
    Newman          PRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGM
    USA300_FPR3757  PRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGM
                    ************************************************************

    COL             EPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAY
    N315            EPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAY
    NCTC8325        EPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAY
    Newman          EPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAY
    USA300_FPR3757  EPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAY
                    ************************************************************

    COL             GQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQN
    N315            GQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQN
    NCTC8325        GQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQN
    Newman          GQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQN
    USA300_FPR3757  GQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQN
                    ************************************************************

    COL             VRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGR
    N315            VRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGR
    NCTC8325        VRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGR
    Newman          VRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGR
    USA300_FPR3757  VRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGR
                    ************************************************************

    COL             GYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEER
    N315            GYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEER
    NCTC8325        GYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEER
    Newman          GYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEER
    USA300_FPR3757  GYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEER
                    ************************************************************

    COL             FHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTT
    N315            FHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTT
    NCTC8325        FHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTT
    Newman          FHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTT
    USA300_FPR3757  FHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTT
                    ************************************************************

    COL             FESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEV
    N315            FESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEV
    NCTC8325        FESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEV
    Newman          FESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEV
    USA300_FPR3757  FESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEV
                    ************************************************************

    COL             SQVEAGETVYFMLTETPFYAISGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQF
    N315            SQVEAGETVYFMLTETPFYAVSGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQF
    NCTC8325        SQVEAGETVYFMLTETPFYAISGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQF
    Newman          SQVEAGETVYFMLTETPFYAISGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQF
    USA300_FPR3757  SQVEAGETVYFMLTETPFYAISGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQF
                    ********************:***************************************

    COL             GQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFS
    N315            GQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFS
    NCTC8325        GQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFS
    Newman          GQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFS
    USA300_FPR3757  GQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFS
                    ************************************************************

    COL             HFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMA
    N315            HFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMA
    NCTC8325        HFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMA
    Newman          HFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMA
    USA300_FPR3757  HFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMA
                    ************************************************************

    COL             PFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKS
    N315            PFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKS
    NCTC8325        PFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKS
    Newman          PFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKS
    USA300_FPR3757  PFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKS
                    ************************************************************

    COL             QLKVKSDDQVVDKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEV
    N315            QMKVKSDDQVVEKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEV
    NCTC8325        QLKVKSDDQVVDKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEV
    Newman          QLKVKSDDQVVDKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEV
    USA300_FPR3757  QLKVKSDDQVVDKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEV
                    *:*********:************************************************

    COL             DVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPI
    N315            DVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPI
    NCTC8325        DVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPI
    Newman          DVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPI
    USA300_FPR3757  DVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPI
                    ************************************************************

    COL             VGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
    N315            VGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
    NCTC8325        VGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
    Newman          VGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
    USA300_FPR3757  VGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
                    ************************************