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Summary[edit source | edit]

  • pan ID?: SAUPAN004245000
  • symbol?: tgt
  • description?: queuine tRNA-ribosyltransferase

      descriptions from strain specific annotations:

    • queuine tRNA-ribosyltransferase
    • tRNA guanosine(34) transglycosylase Tgt
    • tRNA-guanine transglycosylase
  • strand?: -
  • coordinates?: 4492741..4493880
  • synteny block?: BlockID0032730
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1694 (tgt)
    N315:
    SA1465 (tgt)
    NCTC8325:
    Newman:
    NWMN_1541 (tgt)
    USA300_FPR3757:
    04-02981:
    SA2981_1597 (tgt)
    08BA02176:
    C248_1682 (tgt)
    11819-97:
    MS7_1654 (tgt)
    71193:
    ST398NM01_1702
    ECT-R 2:
    ECTR2_1487 (tgt)
    ED133:
    SAOV_1636 (tgt)
    ED98:
    SAAV_1632 (tgt)
    HO 5096 0412:
    SAEMRSA15_15560 (tgt)
    JH1:
    SaurJH1_1729 (tgt)
    JH9:
    SaurJH9_1696 (tgt)
    JKD6008:
    SAA6008_01608 (tgt)
    JKD6159:
    SAA6159_01571 (tgt)
    LGA251:
    SARLGA251_15410 (tgt)
    M013:
    M013TW_1659
    MRSA252:
    SAR1719 (tgt)
    MSHR1132:
    SAMSHR1132_14750
    MSSA476:
    SAS1575 (tgt)
    Mu3:
    SAHV_1626 (tgt)
    Mu50:
    SAV1639 (tgt)
    MW2:
    MW1589 (tgt)
    RF122:
    SAB1508c (tgt)
    ST398:
    SAPIG1702 (tgt)
    T0131:
    SAT0131_01739
    TCH60:
    HMPREF0772_11503 (tgt)
    TW20:
    SATW20_16330 (tgt)
    USA300_TCH1516:
    USA300HOU_1638 (tgt)
    VC40:
    SAVC_07440 (tgt)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MPAVTYEHIKTCKQSGARLGIVHTPHGSFETPMFMPVGTKATVKTMSPEELRQIEAKIIL
    N315            MPAVTYEHIKTCKQSGARLGIVHTPHGSFETPMFMPVGTKATVKTMSPEELRQIEAKIIL
    NCTC8325        MPAVTYEHIKTCKQSGARLGIVHTPHGSFETPMFMPVGTKATVKTMSPEELRQIEAKIIL
    Newman          MPAVTYEHIKTCKQSGARLGIVHTPHGSFETPMFMPVGTKATVKTMSPEELRQIEAKIIL
    USA300_FPR3757  MPAVTYEHIKTCKQSGARLGIVHTPHGSFETPMFMPVGTKATVKTMSPEELRQIEAKIIL
                    ************************************************************

    COL             GNTYHLWLQPGNDIIKHAGGLHKFMNWDGPILTDSGGFQVFSLSNLRKITEEGVEFRHHT
    N315            GNTYHLWLQPGNDIIKHAGGLHKFMNWDGPILTDSGGFQVFSLSNLRKITEEGVEFRHHT
    NCTC8325        GNTYHLWLQPGNDIIKHAGGLHKFMNWDGPILTDSGGFQVFSLSNLRKITEEGVEFRHHT
    Newman          GNTYHLWLQPGNDIIKHAGGLHKFMNWDGPILTDSGGFQVFSLSNLRKITEEGVEFRHHT
    USA300_FPR3757  GNTYHLWLQPGNDIIKHAGGLHKFMNWDGPILTDSGGFQVFSLSNLRKITEEGVEFRHHT
                    ************************************************************

    COL             NGSKLFLSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQR
    N315            NGSKLFLSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQR
    NCTC8325        NGSKLFLSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQR
    Newman          NGSKLFLSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQR
    USA300_FPR3757  NGSKLFLSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQR
                    ************************************************************

    COL             PEDQALFGIIQGGEYEDLREQSAKDLVELDFPGYAIGGLSVGEPKPVMYKMVEHTEQFMP
    N315            PEDQALFGIIQGGEYEDLREQSAKDLVELDFPGYAIGGLSVGEPKPVMYKMVEHTEQFMP
    NCTC8325        PEDQALFGIIQGGEYEDLREQSAKDLVELDFPGYAIGGLSVGEPKPVMYKMVEHTEQFMP
    Newman          PEDQALFGIIQGGEYEDLREQSAKDLVELDFPGYAIGGLSVGEPKPVMYKMVEHTEQFMP
    USA300_FPR3757  PEDQALFGIIQGGEYEDLREQSAKDLVELDFPGYAIGGLSVGEPKPVMYKMVEHTEQFMP
                    ************************************************************

    COL             KDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIARNGTCMTSQGRLVIKNAKFADDLR
    N315            KDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIARNGTCMTSQGRLVIKNAKFADDLR
    NCTC8325        KDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIARNGTCMTSQGRLVIKNAKFADDLR
    Newman          KDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIARNGTCMTSQGRLVIKNAKFADDLR
    USA300_FPR3757  KDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIARNGTCMTSQGRLVIKNAKFADDLR
                    ************************************************************

    COL             PLDENCDCYTCQNYSRAYIRHLIKAEETFGIRLTTIHNLHFLLKLMEDIRQAIREDRLLD
    N315            PLDENCDCYTCQNYSRAYIRHLIKAEETFGIRLTTIHNLHFLLKLMEDIRQAIREDRLLD
    NCTC8325        PLDENCDCYTCQNYSRAYIRHLIKAEETFGIRLTTIHNLHFLLKLMEDIRQAIREDRLLD
    Newman          PLDENCDCYTCQNYSRAYIRHLIKAEETFGIRLTTIHNLHFLLKLMEDIRQAIREDRLLD
    USA300_FPR3757  PLDENCDCYTCQNYSRAYIRHLIKAEETFGIRLTTIHNLHFLLKLMEDIRQAIREDRLLD
                    ************************************************************

    COL             FKEEFFEQYGLNVENPKNF
    N315            FKEEFFEQYGLNVENPKNF
    NCTC8325        FKEEFFEQYGLNVENPKNF
    Newman          FKEEFFEQYGLNVENPKNF
    USA300_FPR3757  FKEEFFEQYGLNVENPKNF
                    *******************