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Summary[edit source | edit]

  • pan ID?: SAUPAN004320000
  • symbol?: citZ
  • description?: citrate synthase

      descriptions from strain specific annotations:

    • citrate synthase
    • Citrate synthase (si)
    • citrate synthase 2 (Citrate synthase II)
    • citrate synthase II
    • methylcitrate synthase
    • citrate (Si)-synthase
  • strand?: -
  • coordinates?: 4561797..4562654
  • synteny block?: BlockID0033440
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1742 (gltA)
    N315:
    SA1518 (citZ)
    NCTC8325:
    Newman:
    NWMN_1588 (citZ)
    USA300_FPR3757:
    04-02981:
    SA2981_1654 (citZ)
    08BA02176:
    C248_1737 (citZ)
    11819-97:
    MS7_1702 (citZ)
    71193:
    ST398NM01_1749
    ECT-R 2:
    ECTR2_1535
    ED133:
    SAOV_1683 (citZ)
    ED98:
    SAAV_1685 (gltA)
    HO 5096 0412:
    SAEMRSA15_16050 (citZ)
    JH1:
    SaurJH1_1786
    JH9:
    SaurJH9_1752
    JKD6008:
    SAA6008_01662 (citZ)
    JKD6159:
    SAA6159_01619 (citZ)
    LGA251:
    SARLGA251_15870 (citZ)
    M013:
    M013TW_1708
    MRSA252:
    SAR1774 (citZ)
    MSHR1132:
    SAMSHR1132_15460
    MSSA476:
    SAS1623
    Mu3:
    SAHV_1681 (citZ)
    Mu50:
    SAV1695 (citZ)
    MW2:
    MW1639 (citZ)
    RF122:
    SAB1554c (citZ)
    ST398:
    SAPIG1749
    T0131:
    SAT0131_01797
    TCH60:
    HMPREF0772_11456 (gltA)
    TW20:
    SATW20_16850 (citZ)
    USA300_TCH1516:
    USA300HOU_1682 (citZ)
    VC40:
    SAVC_07680

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEEL
    N315            MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEEL
    NCTC8325        ------------------------------------------------------------
    Newman          MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEEL
    USA300_FPR3757  MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEEL
                                                                                

    COL             AHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYER
    N315            AHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYER
    NCTC8325        ----------------------------MHPMTALRTSLSYIAHFDPDAENESDENRYER
    Newman          AHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYER
    USA300_FPR3757  AHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYER
                                                :*******************************

    COL             AMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALIL
    N315            AMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALIL
    NCTC8325        AMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALIL
    Newman          AMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALIL
    USA300_FPR3757  AMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALIL
                    ************************************************************

    COL             HADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVD
    N315            HADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVD
    NCTC8325        HADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVD
    Newman          HADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVD
    USA300_FPR3757  HADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVD
                    ************************************************************

    COL             AYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAE
    N315            AYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAE
    NCTC8325        AYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAE
    Newman          AYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAE
    USA300_FPR3757  AYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAE
                    ************************************************************

    COL             EKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIG
    N315            EKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIG
    NCTC8325        EKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIG
    Newman          EKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIG
    USA300_FPR3757  EKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIG
                    ************************************************************

    COL             ETNRKYIPLEERK
    N315            ETNRKYIPLEERK
    NCTC8325        ETNRKYIPLEERK
    Newman          ETNRKYIPLEERK
    USA300_FPR3757  ETNRKYIPLEERK
                    *************