Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005192000
- symbol?: lukH
- synonym: lukA
- description?: succinyl-diaminopimelate desuccinylase
- succinyl-diaminopimelate desuccinylase
- Aerolysin/leukocidin family protein
- bi-component leukocidin LukGH subunit H
- leukocidin/hemolysin toxin subunit S
- leukocidin S subunit LukS-H, putative
- Combined leucocidin/ASH4 hemolysin
- leukocidin/Hemolysin toxin family protein
- leukocidin/lemolysin toxin family protein
- leukocidin-like protein 2
- Leukocidin LukS-PV
- Leukocidin S subunit
- leukocidin subunit
- pseudogene
- putative leukocidin S subunit
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5360678..5361679
- synteny block?: BlockID0040240
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1967
08BA02176:
C248_2028
11819-97:
MS7_2037
6850:
RSAU_001838 (lukH)
71193:
ST398NM01_2061
ECT-R 2:
ECTR2_1877
ED133:
SAOV_2042
ED98:
SAAV_2073
HO 5096 0412:
SAEMRSA15_19280
JH1:
SaurJH1_2100
JH9:
SaurJH9_2063
JKD6008:
SAA6008_02059
JKD6159:
SAA6159_01940
LGA251:
SARLGA251_18240
M013:
M013TW_1977
MRSA252:
SAR2108
MSHR1132:
SAMSHR1132_18480
MSSA476:
SAS1925
Mu3:
SAHV_1991
Mu50:
SAV2005
MW2:
MW1942
RF122:
SAB1876c
ST398:
SAPIG2061
T0131:
SAT0131_02142
TCH60:
HMPREF0772_11177
TW20:
SATW20_20020
USA300_TCH1516:
USA300HOU_2013
VC40:
SAVC_08970
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKN
N315 MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKN
NCTC8325 MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKN
Newman MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKN
USA300_FPR3757 MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKN
************************************************************
COL STAPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKF
N315 STVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKF
NCTC8325 STAPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKF
Newman STAPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKF
USA300_FPR3757 STAPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKF
**.*********************************************************
COL ESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDS
N315 ESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDS
NCTC8325 ESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDS
Newman ESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDS
USA300_FPR3757 ESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDS
************************************************************
COL TKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLF
N315 TKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLF
NCTC8325 TKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLF
Newman TKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLF
USA300_FPR3757 TKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLF
************************************************************
COL YRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDIL
N315 YRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDIL
NCTC8325 YRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDIL
Newman YRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDIL
USA300_FPR3757 YRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDIL
************************************************************
COL KNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
N315 KNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
NCTC8325 KNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
Newman KNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
USA300_FPR3757 KNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
***************************************************