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Summary[edit source | edit]

  • pan ID?: SAUPAN005413000
  • symbol?: rho
  • description?: transcription termination factor Rho

      descriptions from strain specific annotations:

    • transcription termination factor Rho
    • putative methicillin resistance expression factor
  • strand?: -
  • coordinates?: 5571293..5572609
  • synteny block?: BlockID0042090
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2113 (rho)
    N315:
    SA1923 (rho)
    NCTC8325:
    Newman:
    NWMN_2025 (rho)
    USA300_FPR3757:
    04-02981:
    SA2981_2061 (rho)
    08BA02176:
    C248_2135 (rho)
    11819-97:
    MS7_2137 (rho)
    71193:
    ST398NM01_2163
    ECT-R 2:
    ECTR2_1977 (rho)
    ED133:
    SAOV_2162c
    ED98:
    SAAV_2176 (rho)
    HO 5096 0412:
    SAEMRSA15_20290 (rho)
    JH1:
    SaurJH1_2195 (rho)
    JH9:
    SaurJH9_2157 (rho)
    JKD6008:
    SAA6008_02159 (rho)
    JKD6159:
    SAA6159_02035 (rho)
    LGA251:
    SARLGA251_19220 (rho)
    M013:
    M013TW_2080
    MRSA252:
    SAR2209 (rho)
    MSHR1132:
    SAMSHR1132_19440
    MSSA476:
    SAS2024 (rho)
    Mu3:
    SAHV_2105 (rho)
    Mu50:
    SAV2121 (rho)
    MW2:
    MW2045 (rho)
    RF122:
    SAB2005c (rho)
    ST398:
    SAPIG2163 (rho)
    T0131:
    SAT0131_02284
    TCH60:
    HMPREF0772_11069 (rho)
    TW20:
    SATW20_22590 (rho)
    USA300_TCH1516:
    USA300HOU_2109 (rho)
    VC40:
    SAVC_09480 (rho)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVLAIMEAQMEKDGN
    N315            MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVIAIMEAQMEKDGN
    NCTC8325        MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVLAIMEAQMEKDGN
    Newman          MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVLAIMEAQMEKDGN
    USA300_FPR3757  MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVLAIMEAQMEKDGN
                    ***********************************************:************

    COL             YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
    N315            YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
    NCTC8325        YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
    Newman          YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
    USA300_FPR3757  YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
                    ************************************************************

    COL             YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETETQNYSTRIMDLVTPIGLGQ
    N315            YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETETQNYSTRIMDLVTPIGLGQ
    NCTC8325        YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETEIQNYSTRIMDLVTPIGLGQ
    Newman          YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETETQNYSTRIMDLVTPIGLGQ
    USA300_FPR3757  YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETETQNYSTRIMDLVTPIGLGQ
                    ***************************************** ******************

    COL             RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
    N315            RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
    NCTC8325        RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
    Newman          RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
    USA300_FPR3757  RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
                    ************************************************************

    COL             FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
    N315            FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
    NCTC8325        FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
    Newman          FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
    USA300_FPR3757  FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
                    ************************************************************

    COL             ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
    N315            ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
    NCTC8325        ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
    Newman          ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
    USA300_FPR3757  ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
                    ************************************************************

    COL             RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
    N315            RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
    NCTC8325        RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
    Newman          RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
    USA300_FPR3757  RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
                    ************************************************************

    COL             KQLQKSAEESTKTGRPII
    N315            KQLQKSAEESTKTGRPII
    NCTC8325        KQLQKSAEESTKTGRPII
    Newman          KQLQKSAEESTKTGRPII
    USA300_FPR3757  KQLQKSAEESTKTGRPII
                    ******************