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Summary[edit source | edit]

  • pan ID?: SAUPAN005434000
  • symbol?: deoC2
  • description?: Deoxyribose-phosphate aldolase 2

      descriptions from strain specific annotations:

    • Deoxyribose-phosphate aldolase 2
    • deoxyribose-phosphate aldolase
    • putative deoxyribose-phosphate aldolase
  • strand?: -
  • coordinates?: 5592090..5592752
  • synteny block?: BlockID0042290
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2129 (deoC2)
    N315:
    NCTC8325:
    Newman:
    NWMN_2041 (deoC)
    USA300_FPR3757:
    04-02981:
    SA2981_2077
    08BA02176:
    C248_2153 (deoC2)
    11819-97:
    MS7_2155
    71193:
    ST398NM01_2179
    ECT-R 2:
    ECTR2_1993 (deoC)
    ED133:
    SAOV_2177c
    ED98:
    SAAV_2192 (deoC2)
    HO 5096 0412:
    SAEMRSA15_20450 (deoC2)
    JH1:
    SaurJH1_2211
    JH9:
    SaurJH9_2173
    JKD6008:
    SAA6008_02176 (deoC2)
    JKD6159:
    SAA6159_02051 (deoC2)
    LGA251:
    SARLGA251_19380 (deoC2)
    M013:
    M013TW_2097
    MRSA252:
    SAR2225 (deoC2)
    MSHR1132:
    SAMSHR1132_19600
    MSSA476:
    SAS2040
    Mu3:
    SAHV_2121
    Mu50:
    SAV2137
    MW2:
    MW2061
    RF122:
    SAB2021c (deoC2)
    ST398:
    SAPIG2179 (deoC)
    T0131:
    SAT0131_02302
    TCH60:
    HMPREF0772_11053 (deoC2)
    TW20:
    SATW20_22750 (deoC2)
    USA300_TCH1516:
    USA300HOU_2126 (deoC2)
    VC40:
    SAVC_09560

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTV
    N315            MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTV
    NCTC8325        MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTV
    Newman          MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTV
    USA300_FPR3757  MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADSEVLVCTV
                    ************************************************************

    COL             IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
    N315            IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
    NCTC8325        IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
    Newman          IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
    USA300_FPR3757  IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
                    ************************************************************

    COL             VKVIIETVLLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADIEVK
    N315            VKVIIETVLLDHDEIVKASELTKVAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
    NCTC8325        VKVIIETVLLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADIEVK
    Newman          VKVIIETVLLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADIEVK
    USA300_FPR3757  VKVIIETVLLDHDEIVKASELTKTAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
                    ***********************.********************************:***

    COL             ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
    N315            ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
    NCTC8325        ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
    Newman          ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
    USA300_FPR3757  ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
                    ****************************************