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Summary[edit source | edit]

  • pan ID?: SAUPAN006363000
  • symbol?: arcB
  • description?: ornithine carbamoyltransferase

      descriptions from strain specific annotations:

    • ornithine carbamoyltransferase
    • Ornithine carbamoyltransferase, catabolic
    • catabolic ornithine carbamoyltransferase
    • putative ornithine carbamoyltransferase
  • strand?: -
  • coordinates?: 6397911..6398921
  • synteny block?: BlockID0050720
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2656 (arcB2)
    N315:
    SA2427 (arcB)
    NCTC8325:
    Newman:
    NWMN_2533 (arcB)
    USA300_FPR3757:
    04-02981:
    SA2981_2573 (arcB)
    08BA02176:
    C248_2702 (arcB)
    11819-97:
    MS7_2639
    71193:
    ST398NM01_2684
    ECT-R 2:
    ECTR2_2488 (argF)
    ED133:
    SAOV_2683c
    ED98:
    SAAV_2703 (arcB2)
    HO 5096 0412:
    SAEMRSA15_25390 (arcB)
    JH1:
    SaurJH1_2714
    JH9:
    SaurJH9_2658
    JKD6008:
    SAA6008_02693 (arcB)
    JKD6159:
    SAA6159_02530 (arcB)
    LGA251:
    SARLGA251_24060 (arcB)
    M013:
    M013TW_2615
    MRSA252:
    SAR2713 (arcB)
    MSHR1132:
    SAMSHR1132_24580
    MSSA476:
    SAS2520
    Mu3:
    SAHV_2618 (arcB)
    Mu50:
    SAV2634 (arcB)
    MW2:
    MW2555 (arcB)
    RF122:
    SAB2509c (arcB)
    ST398:
    SAPIG2684 (argF)
    T0131:
    SAT0131_02900 (alr2)
    TCH60:
    HMPREF0772_10554 (argF)
    TW20:
    SATW20_27720 (arcB)
    USA300_TCH1516:
    USA300HOU_2634 (arcB3)
    VC40:
    SAVC_12050

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEK
    N315            MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEK
    NCTC8325        MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEK
    Newman          MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEK
    USA300_FPR3757  MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEK
                    ************************************************************

    COL             NSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAV
    N315            NSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAV
    NCTC8325        NSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAV
    Newman          NSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAV
    USA300_FPR3757  NSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAV
                    ************************************************************

    COL             EDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEGINLTYVGDGRNNIAHSLMVA
    N315            EDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEGINLTYVGDGRNNIAHSLMVA
    NCTC8325        EDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEGINLTYVGDGRNNIAHSLMVA
    Newman          EDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEGINLTYVGDGRNNIAHSLMVA
    USA300_FPR3757  EDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEGINLTYVGDGRNNIAHSLMVA
                    ************************************************************

    COL             GAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSVMITDNIAEAVENTDAIYTDVWVS
    N315            GAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSIMITDNIAEAVENTDAIYTDVWVS
    NCTC8325        GAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSVMITDNIAEAVENTDAIYTDVWVS
    Newman          GAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSVMITDNIAEAVENTDAIYTDVWVS
    USA300_FPR3757  GAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSVMITDNIAEAVENTDAIYTDVWVS
                    ************************************:***********************

    COL             MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAE
    N315            MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAE
    NCTC8325        MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAE
    Newman          MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAE
    USA300_FPR3757  MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAE
                    ************************************************************

    COL             MEVTDQIFRSEHSKVFDQAENRMHTIKAVMAATLGS
    N315            MEVTDQIFRSEHSKVFDQAENRMHTIKAVMAATLGS
    NCTC8325        MEVTDQIFRSEHSKVFDQAENRMHTIKAVMAATLGS
    Newman          MEVTDQIFRSEHSKVFDQAENRMHTIKAVMAATLGS
    USA300_FPR3757  MEVTDQIFRSEHSKVFDQAENRMHTIKAVMAATLGS
                    ************************************