NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0870 [new locus tag: SAUSA300_RS04695 ]
- pan locus tag?: SAUPAN003077000
- symbol: rexA
- pan gene symbol?: addA
- synonym:
- product: exonuclease RexA
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_0870 [new locus tag: SAUSA300_RS04695 ]
- symbol: rexA
- product: exonuclease RexA
- replicon: chromosome
- strand: +
- coordinates: 951985..955638
- length: 3654
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 3914895 NCBI
- RefSeq: YP_493570 NCBI
- MicrobesOnline: 1292385 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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3601ATGACAATTCCAGAGAAACCACAAGGCGTGATTTGGACTGACGCGCAATGGCAAAGTATT
TACGCAACTGGACAAGATGTACTTGTTGCAGCCGCGGCAGGTTCAGGTAAAACAGCTGTA
CTAGTTGAGCGTATTATCCAAAAGATTTTACGTGATGGCATTGATGTCGATCGACTTTTA
GTCGTAACGTTTACAAACTTAAGCGCACGTGAAATGAAGCATCGTGTAGACCAACGTATT
CAAGAGGCATCGATTGCTGATCCTGCAAATGCACACTTGAAAAACCAACGCATCAAAATT
CATCAAGCACAAATATCTACACTCCATAGTTTTTGCTTGAAATTAATTCAACAGCATTAT
GATGTATTAAATATTGACCCGAACTTTAGAACAAGCAGTGAAGCTGAAAATATTTTATTA
TTAGAACAAACGATAGATGAGGTCATAGAACAACATTACGATATCCTTGATCCTGCTTTT
ATTGAATTAACAGAGCAATTGTCTTCAGATAGAAGTGATGATCAGTTTCGAATGATTATT
AAACAATTGTATTTCTTTAGCGTTGCAAATCCAAATCCTAAAAATTGGTTGGATCAATTG
GTGACACCATACGAAGAAGAAGCACAACAAGCGCAACTTATTCAACTACTAACAGACTTA
TCTAAAGTATTTATCACAGCTGCTTATGATGCTTTAAATAAGGCGTATGATTTGTTTAGT
ATGATGGATAGCGTCGATAAACATTTAGCTGTTATAGAAGATGAACGACGTTTAATGGGG
CGTGTTTTAGAAGGTGGCTTTATTGATATACCTTATTTAACTGGTCACGAATTTGGCGCG
CGTTTGCCTAATGTAACAGCGAAAATTAAAGAAGCAAATGAAATGATGGTCGATGCCTTA
GAAGATGCTAAACTTCAGTATAAAAAATATAAATCATTAATTGATAAAGTGAAGAGTGAT
TACTTTTCAAGAGAAGCTGATGATTTGAAAGCTGATATGCAACAATTGGCGCCACGAGTA
AAGTACCTTGCGCGTATTGTGAAAGATGTTATGTCAGAATTCAATCGAAAAAAGCGTAGC
AAAAATATTTTGGATTTTTCTGATTATGAACATTTTGCATTACAAATTTTAACTAATGAG
GATGGTTCGCCTTCAGAAATTGCCGAATCATACCGTCAACACTTCCAAGAAATATTGGTC
GATGAGTATCAAGATACGAACCGAGTTCAAGAGAAAATACTATCTTGCATCAAAACGGGT
GATGAACATAATGGTAATTTATTTATGGTTGGAGATGTTAAGCAATCCATTTATAAATTT
AGACAAGCTGATCCAAGTTTATTTATTGAAAAGTATCAACGCTTTACTATAGATGGAGAT
GGCACTGGACGTCGAATTGATTTGTCGCAAAACTTCCGTTCTCGAAAAGAAGTACTGTCA
ACGACTAACTATATATTCAAACATATGATGGATGAACAAGTCGGTGAAGTAAAATATGAT
GAAGCGGCACAGTTGTATTATGGTGCACCATATGATGAATCGGACCATCCAGTAAACTTA
AAAGTCCTTGTTGAAGCGGATCAAGAACATAGTGATTTAACTGGTAGTGAACAAGAAGCG
CATTTTATAGTAGAACAAGTTAAAGATATCTTAGAACATCAAAAAGTTTATGATATGAAA
ACAGGAAGCTATAGAAGTGCGACATACAAGGATATCGTTATTCTAGAACGCAGCTTTGGA
CAAGCTCGCAATTTACAACAAGCCTTTAAAAATGAAGATATTCCATTCCATGTGAATAGT
CGTGAAGGTTACTTTGAACAAACAGAAGTCCGCTTAGTATTATCATTTTTAAGAGCGATA
GATAATCCATTACAAGATATTTATTTAGTTGGGTTAATGCGCTCCGTTATATATCAGTTC
AAAGAAGACGAATTAGCTCAAATTAGAATATTGAGTCCAAATGATGACTACTTCTATCAA
TCGATTGTAAATTACATTAATGACGAAGCAGCAGATGCAATTTTAGTTGATAAATTAAAA
ATGTTTTTATCAGATATTCAAAGTTACCAACAATATAGTAAAGATCATCCGGTGTATCAG
TTAATTGATAAATTTTATAATGATCATTATGTTATTCAATACTTTAGTGGACTTATTGGT
GGACGTGGACGACGTGCAAATCTTTATGGTTTATTTAATAAAGCTATCGAGTTTGAGAAT
TCAAGTTTTAGAGGTTTATATCAATTTATTCGTTTTATCGATGAATTGATTGAAAGAGGC
AAAGATTTTGGTGAGGAAAATGTAGTTGGTCCAAACGATAATGTCGTTAGAATGATGACA
ATTCATAGTAGTAAAGGTCTAGAGTTTCCATTTGTCATTTATTCTGGATTGTCAAAAGAT
TTTAATAAACGTGATTTGAAACAACCAGTTATTTTAAATCAGCAATTTGGTCTCGGAATG
GATTATTTTGATGTGGATAAAGAAATGGCATTTCCATCTTTAGCTTCGGTTGCATATAGA
GCTGTTGCCGAAAAAGAACTTGTGTCAGAAGAAATGCGATTAGTCTATGTAGCATTAACA
AGAGCGAAAGAACAACTTTATTTAATTGGTAGAGTGAAAAATGATAAATCATTACTAGAA
CTAGAGCAATTGTCTATTTCTGGTGAGCACATTGCTGTCAATGAACGATTAACTTCACCA
AATCCGTTCCATCTTATTTATAGTATTTTATCTAAACATCAATCTGCGTCAATTCCAGAT
GATTTAAAATTTGAAAAAGATATAGCACAAATTGAAGATAGTAGTCGTCCGAATGTAAAT
ATTTCAATTGTGTACTTTGAAGATGTGTCTACAGAAACCATTTTAGATAATGATGAATAT
CGTTCGGTTAATCAATTAGAAACTATGCAAAATGGTAATGAAGATGTTAAAGCACAAATT
AAACACCAACTTGATTATCGATATCCATATGTAAATGATACTAAAAAGCCCTCAAAACAA
TCTGTTTCTGAATTGAAAAGACAATATGAAACAGAAGAAAGTGGCACAAGTTACGAACGA
GTAAGGCAATATCGTATCGGTTTTTCAACGTATGAACGACCTAAATTTCTAAGTGAACAA
GGTAAACGAAAAGCGAATGAAATTGGTACGTTAATGCATACAGTGATGCAACATTTACCA
TTCAAAAAAGAACGCATATCTGAAGTTGAGTTACATCAGTATATCGATGGATTAATCGAT
AAACATATTATCGAAGCAGATGCGAAAAAAGATATCCGTATGGATGAAATAATGACATTT
ATCAATAGTGAGTTATATTCGATTATTGCTGAAGCAGAGCAAGTTTATCGTGAATTACCG
TTTGTAGTTAACCAAGCATTAGTTGACCAATTGCCACAAGGAGACGAAGACGTCTCAATT
ATTCAAGGTATGATTGACTTAATCTTTGTTAAAGATGGTGTGCATTATTTTGTAGACTAT
AAAACCGATGCATTTAATCGTCGCCGTGGGATGACAGATGAAGAAATTGGTACACAATTA
AAAAATAAATATAAGATACAGATGAAATATTATCAAAATACGCTTCAAACGATTCTTAAT
AAAGAAGTTAAAGGTTATTTATACTTCTTCAAATTTGGTACATTGCAACTATAG60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_0870 [new locus tag: SAUSA300_RS04695 ]
- symbol: RexA
- description: exonuclease RexA
- length: 1217
- theoretical pI: 4.97363
- theoretical MW: 141287
- GRAVY: -0.470666
⊟Function[edit source | edit]
- reaction: EC 3.6.4.12? ExPASyDNA helicaseATP + H2O = ADP + phosphateEC 3.1.-.-? ExPASy
- TIGRFAM: DNA metabolismDNA replication, recombination, and repairhelicase-exonuclease AddAB, AddA subunit (TIGR02785; EC 3.1.-.-,3.6.4.12; HMM-score: 1455.5)DNA metabolismDNA replication, recombination, and repairdouble-strand break repair helicase AddA (TIGR02784; HMM-score: 214.8)DNA metabolismDNA replication, recombination, and repairexodeoxyribonuclease V, beta subunit (TIGR00609; EC 3.1.11.5; HMM-score: 211.9)DNA metabolismDNA replication, recombination, and repairATP-dependent DNA helicase PcrA (TIGR01073; EC 3.6.4.12; HMM-score: 211.5)DNA metabolismDNA replication, recombination, and repairDNA helicase II (TIGR01075; EC 3.6.4.12; HMM-score: 195.4)DNA metabolismDNA replication, recombination, and repairATP-dependent DNA helicase Rep (TIGR01074; EC 3.6.4.12; HMM-score: 190.1)
- TheSEED:
- PFAM: P-loop_NTPase (CL0023) UvrD-helicase; UvrD/REP helicase N-terminal domain (PF00580; HMM-score: 269.6)UvrD_C; UvrD-like helicase C-terminal domain (PF13361; HMM-score: 112.8)AAA_19; AAA domain (PF13245; HMM-score: 75.6)UvrD_C_2; UvrD-like helicase C-terminal domain (PF13538; HMM-score: 37.9)DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 28.9)PDDEXK (CL0236) PDDEXK_1; PD-(D/E)XK nuclease superfamily (PF12705; HMM-score: 25.8)P-loop_NTPase (CL0023) Viral_helicase1; Viral (Superfamily 1) RNA helicase (PF01443; HMM-score: 22.1)AAA_12; AAA domain (PF13087; HMM-score: 19.3)no clan definedOccludin_ELL; Occludin homology domain (PF07303; HMM-score: 16.5)P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 16.4)no clan definedDUF2564; Protein of unknown function (DUF2564) (PF10819; HMM-score: 11.8)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors: Mg2+
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular Possibility: 1
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.104
- Ymax_pos: 32
- Cmax: 0.132
- Cmax_pos: 32
- Smax: 0.162
- Smax_pos: 31
- Smean: 0.055
- D: 0.085
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPKNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]