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NCBI: 10-JUN-2013

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0949 [new locus tag: SAUSA300_RS05100 ]
  • pan locus tag?: SAUPAN003249000
  • symbol: sspC
  • pan gene symbol?: sspC
  • synonym:
  • product: cysteine protease

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_0949 [new locus tag: SAUSA300_RS05100 ]
  • symbol: sspC
  • product: cysteine protease
  • replicon: chromosome
  • strand: -
  • coordinates: 1037912..1038241
  • length: 330
  • essential: unknown other strains

⊟Accession numbers[edit source | edit]

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGTATCAACTACAATTTATAAATTTAGTTTACGACACAACCAAACTCACACATCTAGAA
    CAAACCAATATCAATTTATTCATTGGTAATTGGAGTAATCATCAATTACAAAAATCAATT
    TGTATACGTCATGGCGATGATACAAGTCACAATCAATATCATATTCTTTTTATAGATACG
    GCACATCAACGCATTAAATTTTCATCTATTGATAATGAAGAAATCATTTATATTCTTGAT
    TATGATGATACACAGCATATCCTCATGCAAACGTCATCCAAACAAGGTATTGGCACTTCG
    CGACCAATCGTTTATGAGCGCTTAGTATAA
    60
    120
    180
    240
    300
    330

⊟Protein[edit source | edit]

Protein Data Bank: 1PXV
Protein Data Bank: 1Y4H

⊟General[edit source | edit]

  • locus tag: SAUSA300_0949 [new locus tag: SAUSA300_RS05100 ]
  • symbol: SspC
  • description: cysteine protease
  • length: 109
  • theoretical pI: 6.38356
  • theoretical MW: 12881.4
  • GRAVY: -0.410092

⊟Function[edit source | edit]

  • TIGRFAM:
  • TheSEED:  
    Staphostatin B 
  • PFAM:
    bBprotInhib (CL0354) Staphostatin_B; Staphostatin B (PF09023; HMM-score: 247.3)
    and 1 more
    Staphostatin_A; Staphostatin A (PF09022; HMM-score: 27.5)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 10
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.122
    • Ymax_pos: 19
    • Cmax: 0.11
    • Cmax_pos: 27
    • Smax: 0.192
    • Smax_pos: 9
    • Smean: 0.146
    • D: 0.131
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

⊟Protein sequence[edit source | edit]

  • MYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSIDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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