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NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1793 [new locus tag: SAUSA300_RS09815 ]
  • pan locus tag?: SAUPAN004774000
  • symbol: SAUSA300_1793
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1793 [new locus tag: SAUSA300_RS09815 ]
  • symbol: SAUSA300_1793
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1976504..1977700
  • length: 1197
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGGTTAAATTTATTCATTGTTCGGATTTACATTTAGATAGTCCTTTCAAATCTAAGAGT
    CATATAAGCCCTAAAATTTTTGAGGATGTTCAAAAAAGTGCTTATGAAAGTTTTAAAAAT
    ATTGTAGATATTGCATTACAACAAGATGTTGATTTTGTAATTATCGCGGGTGATTTATTT
    GATAGTGAAAACAGAACATTACGTGCTGAAATTTTCTTAAAACAGCAATTTGAACGTTTA
    CAAAATGAACAAATCTTTGTTTATGTTTGTCATGGTAATCACGATCCTTTATCATCAAAG
    ATTTCATCAAACTGGCCAGATAATGTTTCTGTATTTTCAAATAAAGTTGAGACGTATGAA
    GCAATTACTAAATCTGGTGAAACAATTTATATTCACGGATTTAGTTATGAAAATAGAGCA
    AGTTATGAGAACAAGATTGATGAATATCCATCAAGTCAAGGCCAAAAAGGCATACATATT
    GGTGTCTTGCATGGTACGTATAGTAAATCTTCAGTTAACGAAAGATATACCGAGTTCATT
    TTAGAAGATTTAAACAGTAAATTGTATCATTATTGGGCTTTAGGTCATATACATGAACGT
    CAACAATTAAGTGATATGCCTGTAATTAACTATTCAGGTAATATTCAAGGTAGACATTTT
    AATGAGCAAGGTGAAAAAGGTTGCTTATTAATCGAGGGTGACCACTTAAAATTAAAGACT
    AAATTTTATCCTACACAGTATATTAGATTTGAAGAAGCAACTATTGAAACGGATAAGACA
    TCTAAGCAAGGTTTATACGAGGTCATTCAAAACTTTAAAGAACAAGTGAGAGAAGAAGGA
    AAAGCCTTTTATCGTTTAACGCTTGTTATTAATAGTGAGACATTAATTTCACCTCAAGAT
    TTATTACAAGTTGAAGAAATGATTACAGATTATGAAGAAAACGAAAATCAATTTGTATAT
    ATTGATGAGTTAAAAATACAATATGCACAAAATGATGAGTCACCTTTAGTTAATGAATTT
    TCAGCGGAATTATTAGTCGATCAAACTGTTTTTGATAAAGCGATGTCAGATTTATATTTA
    AATCCAAGGGCATCTAAGTTCCTAGACGATTATGGAACATTCGACCATACAGCATTAGTT
    AATCGTGCTGAAGAAATATTAAAAGCTGAAATGAGAGGTGAACAAAATGATAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1197

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_1793 [new locus tag: SAUSA300_RS09815 ]
  • symbol: SAUSA300_1793
  • description: hypothetical protein
  • length: 398
  • theoretical pI: 4.63383
  • theoretical MW: 46224.1
  • GRAVY: -0.586181

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair exonuclease SbcCD, D subunit (TIGR00619; HMM-score: 60.3)
    and 5 more
    metallophosphoesterase, DNA ligase-associated (TIGR04123; HMM-score: 20.7)
    putative phosphoesterase (TIGR03729; HMM-score: 20)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA repair protein (mre11) (TIGR00583; HMM-score: 19.9)
    Unknown function Enzymes of unknown specificity phosphodiesterase, MJ0936 family (TIGR00040; EC 3.1.-.-; HMM-score: 15.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Thiamine hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (TIGR00097; EC 2.7.1.49,2.7.4.7; HMM-score: 10.8)
  • TheSEED  :
    • DNA repair exonuclease family protein YhaO
    DNA Metabolism DNA repair DNA repair, bacterial  DNA repair exonuclease family protein YhaO
  • PFAM:
    Calcineurin (CL0163) Metallophos; Calcineurin-like phosphoesterase (PF00149; HMM-score: 53)
    and 3 more
    Metallophos_2; Calcineurin-like phosphoesterase superfamily domain (PF12850; HMM-score: 41)
    no clan defined DUF835; Protein of unknown function (DUF835) (PF05763; HMM-score: 18.5)
    Chelatase (CL0043) CbiK; Cobalt chelatase (CbiK) (PF06180; HMM-score: 13.9)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001938
    • TAT(Tat/SPI): 0.000183
    • LIPO(Sec/SPII): 0.000916
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDIALQQDVDFVIIAGDLFDSENRTLRAEIFLKQQFERLQNEQIFVYVCHGNHDPLSSKISSNWPDNVSVFSNKVETYEAITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHIGVLHGTYSKSSVNERYTEFILEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGRHFNEQGEKGCLLIEGDHLKLKTKFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQVREEGKAFYRLTLVINSETLISPQDLLQVEEMITDYEENENQFVYIDELKIQYAQNDESPLVNEFSAELLVDQTVFDKAMSDLYLNPRASKFLDDYGTFDHTALVNRAEEILKAEMRGEQNDN

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]