NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS02430 [old locus tag: SAUSA300_0454 ]
- pan locus tag?: SAUPAN002200000
- symbol: SAUSA300_RS02430
- pan gene symbol?: recR
- synonym:
- product: recombination protein RecR
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS02430 [old locus tag: SAUSA300_0454 ]
- symbol: SAUSA300_RS02430
- product: recombination protein RecR
- replicon: chromosome
- strand: +
- coordinates: 511441..512037
- length: 597
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (511441..512037) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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541ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATT
GGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTT
GTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTATGT
GGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATAC
AAAGGTTTATATCACGTTTTACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAA
GATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACGATGAAGTTAGCGAATTAATC
TTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTA
GAGTATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS02430 [old locus tag: SAUSA300_0454 ]
- symbol: SAUSA300_RS02430
- description: recombination protein RecR
- length: 198
- theoretical pI: 4.75667
- theoretical MW: 22099.4
- GRAVY: -0.191414
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: DNA metabolismDNA replication, recombination, and repairrecombination protein RecR (TIGR00615; HMM-score: 290.7)DNA metabolismDNA replication, recombination, and repairHolliday junction DNA helicase RuvA (TIGR00084; EC 3.6.4.12; HMM-score: 11.4)
- TheSEED:
- PFAM: Toprim-like (CL0413) Toprim_4; Toprim domain (PF13662; HMM-score: 91.8)no clan definedRecR; RecR protein (PF02132; HMM-score: 60)Toprim-like (CL0413) Toprim; Toprim domain (PF01751; HMM-score: 36.6)HHH (CL0198) HHH; Helix-hairpin-helix motif (PF00633; HMM-score: 22.4)HHH_5; Helix-hairpin-helix domain (PF14520; HMM-score: 19.6)HHH_8; Helix-hairpin-helix domain (PF14716; HMM-score: 15.1)IMS_HHH; IMS family HHH motif (PF11798; HMM-score: 14.1)RING (CL0229) Zn_ribbon_17; Zinc-ribbon, C4HC2 type (PF17120; HMM-score: 13.2)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.151
- Ymax_pos: 28
- Cmax: 0.128
- Cmax_pos: 47
- Smax: 0.328
- Smax_pos: 24
- Smean: 0.164
- D: 0.156
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRSVICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLVKPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS02430 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]