NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS03900 [old locus tag: SAUSA300_0724 ]
- pan locus tag?: SAUPAN002645000
- symbol: SAUSA300_RS03900
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS03900 [old locus tag: SAUSA300_0724 ]
- symbol: SAUSA300_RS03900
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 804192..805070
- length: 879
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (804192..805070) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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841ATGAAAAAAATTGTTATTATCGCTGTTTTAGCGATTTTATTTGTAGTAATAAGTGCTTGT
GGTAATAAAGAAAAAGAGGCACAACATCAATTTACTAAGCAATTTAAAGATGTTGAGCAA
AAACAAAAAGAATTACAACATGTCATGGATAATATACATTTGAAAGAAATTGATCATCTA
AGTAAAACTGATACAACTGATAAAAATAGTAAAGAATTTAAGGCACTACAAGAAGATGTT
AAAAACCATCTCATACCTAAATTTGAAGCATATTATAAGTCAGCAAAAAATTTGCCTGAT
GATACAATGAAAGTTAAGAAATTAAAAAAAGAATATATGACGCTTGCAAATGAGAAGAAG
GATGCGATATATCAATTAAAAAAATTCATAGGTTTATGTAATCAATCTATCAAGTATAAC
GAAGACATTTTAGATTATACGAAACAATTTGAAAAAAATAGATACAAAGTTGAATCAGAA
ATTAAATTAGCTGATAATAAAAGTGAAGCAACTAATCTTACGACAAAATTAGAACATAAT
AATAAAGCGTTAAGAGATACTGCGAAGAAGAACCTAGATGATAGTAAAGAAAATGAAGTA
AAAGGCGCGATTAAAAATCACATTATGCCAATGATTGAAAAGCAAATTACCGATATTAAC
CAAACTAATATTAGTGATAAGCATGTTAATAATGCAAGGAAAAACGCAATAGAAATGTAT
TACAGTCTGCAGAACTATTATAATACACGTATTGAAACAATAAAGGTTAGTGAGAAGTTA
TCAAAAGTCGATGTAGATAAGTTGCCGAAAAAGGGTATAGATATAACTCACGGCGATAAA
GCCTTTGAAAAAAAGCTTGAAAAATTAGAAGAAAAATAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS03900 [old locus tag: SAUSA300_0724 ]
- symbol: SAUSA300_RS03900
- description: hypothetical protein
- length: 292
- theoretical pI: 9.71132
- theoretical MW: 34082
- GRAVY: -0.89726
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: WXG100 family type VII secretion target (TIGR03930; HMM-score: 9.2)Cellular processesCell divisioncell division protein FtsL (TIGR02209; HMM-score: 7.2)phage lysis regulatory protein, LysB family (TIGR03495; HMM-score: 6.8)Cellular processesSporulation and germinationstage II sporulation protein R (TIGR02837; HMM-score: 4.4)
- TheSEED:
- PFAM: no clan definedIncA; IncA protein (PF04156; HMM-score: 16.3)Ca_hom_mod; Calcium homeostasis modulator (PF14798; HMM-score: 14.4)4HB_MCP (CL0457) TarH; Tar ligand binding domain homologue (PF02203; HMM-score: 13.3)no clan definedDMPK_coil; DMPK coiled coil domain like (PF08826; HMM-score: 13.3)DUF3008; Protein of unknwon function (DUF3008) (PF11450; HMM-score: 12.3)Ac76; Orf76 (Ac76) (PF05814; HMM-score: 7.6)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 4.6
- Cellwall Score: 2.48
- Extracellular Score: 2.92
- Internal Helix: 1
- LocateP:
- SignalP: Signal peptide length 28 aa
- Ymax: 0.49
- Ymax_pos: 28
- Cmax: 0.324
- Cmax_pos: 28
- Smax: 0.909
- Smax_pos: 18
- Smean: 0.766
- D: 0.597
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKKIVIIAVLAILFVVISACGNKEKEAQHQFTKQFKDVEQKQKELQHVMDNIHLKEIDHLSKTDTTDKNSKEFKALQEDVKNHLIPKFEAYYKSAKNLPDDTMKVKKLKKEYMTLANEKKDAIYQLKKFIGLCNQSIKYNEDILDYTKQFEKNRYKVESEIKLADNKSEATNLTTKLEHNNKALRDTAKKNLDDSKENEVKGAIKNHIMPMIEKQITDINQTNISDKHVNNARKNAIEMYYSLQNYYNTRIETIKVSEKLSKVDVDKLPKKGIDITHGDKAFEKKLEKLEEK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS03900 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]