NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS05670 [old locus tag: SAUSA300_1052 ]
- pan locus tag?: SAUPAN003394000
- symbol: SAUSA300_RS05670
- pan gene symbol?: ecb
- synonym:
- product: fibrinogen-binding protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS05670 [old locus tag: SAUSA300_1052 ]
- symbol: SAUSA300_RS05670
- product: fibrinogen-binding protein
- replicon: chromosome
- strand: +
- coordinates: 1150660..1150989
- length: 330
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (1150660..1150989) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
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301ATGAAAAAGAATTTTATTGGGAAATCAATTTTAAGCATAGCTGCTATTAGTTTAACGGTA
TCAACGTTTGCCGGTGAATCTCATGCACAAACTAAAAACGTTGAAGCTGCTAAAAAATAT
GATCAGTATCAAACAAACTTTAAAAAACAAGTAAATAAAAAAGTTGTGGATGCACAAAAA
GCTGTAAACTTTTTCAAACGTACAAGAACTGTTGCAACACACCGTAAAGCACAAAGAGCT
GTTAATTTAATTCATTTCCAACACAGTTATGAAAAGAAAAAATTACAAAGACAAATCGAT
CTAGTTTTAAAATATAATACTTTAAAATAA60
120
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330
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS05670 [old locus tag: SAUSA300_1052 ]
- symbol: SAUSA300_RS05670
- description: fibrinogen-binding protein
- length: 109
- theoretical pI: 11.1179
- theoretical MW: 12596.6
- GRAVY: -0.633027
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: no clan definedefb-c; Extracellular fibrinogen binding protein C terminal (PF12199; HMM-score: 130.8)DUF3546; Domain of unknown function (DUF3546) (PF12066; HMM-score: 18)IDEAL; IDEAL domain (PF08858; HMM-score: 13.2)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.09
- Cellwall Score: 0.18
- Extracellular Score: 9.73
- Internal Helices: 0
- LocateP:
- SignalP: Signal peptide length 30 aa
- Ymax: 0.8
- Ymax_pos: 30
- Cmax: 0.787
- Cmax_pos: 30
- Smax: 0.941
- Smax_pos: 14
- Smean: 0.849
- D: 0.819
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNFFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS05670 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]