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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS00440 [old locus tag: SA0059 ]
  • pan locus tag?: SAUPAN000446000
  • symbol: SA_RS00440
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS00440 [old locus tag: SA0059 ]
  • symbol: SA_RS00440
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 66630..68423
  • length: 1794
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (66630..68423) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGACTCAAACTAACCCTTCATTTAATCCTTCACCACGATACAAATCAAAAAAAGGTTGG
    TATAAAGACAAGCCTCCCAAAGAAAAAGGAGGAATGCCTACTGAAGTTGAAATCGCAGGT
    CCTATCGTTATCGAAAATAAGTTTATTGACCCTAAAACTAACACTGAAAAAGTAATTATT
    ACAGACGAGGATCAAAAAGAAATTGTTGAATCTAGTGATATTTTAACAACACAAAAACTG
    CCATCTTTAATGAAGTATGGATTTAGTATTAATGAAAAATATACAAAAGATTTAGGTTAT
    GCGTTGCAACAAATGCGCAATCAATTACCCATTTCCTACTTATATGAAGGGGTAGGTATA
    CTGGAAACACCGTTTGGTCCTATTGTATCGTTAAGTGAAATCTATACTACTAAAGAATTT
    GATAATAAATCTCCATCTGACGCCATTTGTGATAATGCTTATGACTTAACTCCTAAAGGT
    ACATTTGATAATTGGTTTAACATGTATCTAAAAGAGGTTAAAGGTTCTCTTCTTTTAGAA
    TTAGCAGTCGTATTTGGTATTTCTGCCTTAGTGACGAGTTTCCTGAAGCACAAACATGAA
    ACCGAATTTGCCGGAATCATTTTTAGTTTTACAGGTCAATCCTCAACCGGTAAGTCAACT
    GCAGCTTCTTTAGCTGTATCAGTCGCTGGTAACCCTACCAAAGGTAATGAAACTCTCTTT
    AGAAATTGGAATGCCACACGTAATGCACTTGAAGGTTACTTGAGTAACAATTTTGGTATA
    CCTATTGTATTTGATGAACTCTCATCAGCAACTTTTAGAGATACAACGGGGTTATTGTAC
    TCCATCACTGAAGGTCAAGGTCGTCAACGTTCAAACGTTCATGGAGAAGTTAAAACGCCT
    AAGAATTGGGGTACTTCTGTCATTTCAACGTCAGAACACAGTATTTTTAATGATTCAGCT
    CAAAACGATGGATTACGTGTAAGAACCATCGAGATTAATGAACAATTCACTACAAATGCG
    ACCAATGCTGACAATATTAAAAAAGCTGTAGCACTAAACTATGGTCATGTTTTACCGTTA
    GTAGCTAAATATCTTATAAATCGTGAAGATGAAGTTATTCAATGGTTTTACAAGGAAGTA
    GATTGGTTTGAAGCTAAATTGAAAGATGATAAAAGCAACACAGGCAATCGTATGTTTAAG
    CGTTATGCAGTCATTACAACATCTGCAAAAATATTAGGTCGTGTTTTAGCTACAGATATT
    GATATCGCTAAAATAAGAGACTACTTTATTGATTATCATGGTCATACAATCTCTGAACGC
    TCATTAGCTGATAAAGCTATCGATGTCATCATTCAATTTGTAGCACAAAACAGAGGTAAG
    TTTTCAGATGAAGGTGCTTTGAAAAATATGTTTGAGAACTATGGATTAATCTCATTAAAA
    GATGACCATATCGAAGTAAAAATGATTGCAAACGTTTTTAAACAGATGCTAAACAATCAT
    CAATTTCAAGATGTTAATAATGTTGTCAACGCCTTAAGAGATAAAGGTTTCATATTAGCT
    GACCGTGGACGCCAAACAACTAAAAGAAGTGTCAAAGATAATAGCGGTAAAAAACAATCA
    CTTGTATTTTACCATCTAAAATTAGATGTAGAGTTTGCATCTATCCTGGGATTAACTAAA
    GATAAGTCGTTAATTCAAAATTGGACACCGGCAAATGATAACAAAGCTGCGAAAGAACTT
    TTTAAATCCGCTAATGAGGGGATAGGCCCTTCAGGAGTTCACGAAGATTTCTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1794

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS00440 [old locus tag: SA0059 ]
  • symbol: SA_RS00440
  • description: hypothetical protein
  • length: 597
  • theoretical pI: 7.42234
  • theoretical MW: 67037.3
  • GRAVY: -0.436013

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) DUF927; Domain of unknown function (DUF927) (PF06048; HMM-score: 255.2)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 12.7)
    Thioredoxin (CL0172) GSHPx; Glutathione peroxidase (PF00255; HMM-score: 12.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.181
    • Ymax_pos: 16
    • Cmax: 0.107
    • Cmax_pos: 16
    • Smax: 0.406
    • Smax_pos: 5
    • Smean: 0.299
    • D: 0.227
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446117245 NCBI
  • RefSeq: WP_000195100 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MTQTNPSFNPSPRYKSKKGWYKDKPPKEKGGMPTEVEIAGPIVIENKFIDPKTNTEKVIITDEDQKEIVESSDILTTQKLPSLMKYGFSINEKYTKDLGYALQQMRNQLPISYLYEGVGILETPFGPIVSLSEIYTTKEFDNKSPSDAICDNAYDLTPKGTFDNWFNMYLKEVKGSLLLELAVVFGISALVTSFLKHKHETEFAGIIFSFTGQSSTGKSTAASLAVSVAGNPTKGNETLFRNWNATRNALEGYLSNNFGIPIVFDELSSATFRDTTGLLYSITEGQGRQRSNVHGEVKTPKNWGTSVISTSEHSIFNDSAQNDGLRVRTIEINEQFTTNATNADNIKKAVALNYGHVLPLVAKYLINREDEVIQWFYKEVDWFEAKLKDDKSNTGNRMFKRYAVITTSAKILGRVLATDIDIAKIRDYFIDYHGHTISERSLADKAIDVIIQFVAQNRGKFSDEGALKNMFENYGLISLKDDHIEVKMIANVFKQMLNNHQFQDVNNVVNALRDKGFILADRGRQTTKRSVKDNSGKKQSLVFYHLKLDVEFASILGLTKDKSLIQNWTPANDNKAAKELFKSANEGIGPSGVHEDF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS00440 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]