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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03690 [old locus tag: SA0646 ]
  • pan locus tag?: SAUPAN002575000
  • symbol: SA_RS03690
  • pan gene symbol?:
  • synonym:
  • product: deoxyribodipyrimidine photo-lyase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS03690 [old locus tag: SA0646 ]
  • symbol: SA_RS03690
  • product: deoxyribodipyrimidine photo-lyase
  • replicon: chromosome
  • strand: +
  • coordinates: 740268..741641
  • length: 1374
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002745 (740268..741641) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGGCAATTGCTGTGTTATTAAATCGAATGTTTCGAATGGAACACAATCCATTATTTGAA
    TATATTTATCAACAAAAAGAAGACATTGATGCATGTTATTTTATCATTCCGGAAGAGGAC
    ATGTCTTCAGCTTCTGATTTGAAAGCACAGTTTTATCGCGGTACTTTGCAGCGCTTTTAC
    CAATCGTTGCACGCAGAAAAGCTTACACCTTATGTTATGTCTTATGACGATATCATTTCA
    TTTTGTAAAGAGAACAATATCTCTGAAGTAGTGATTGCGGGTGATATTATGAGTTATCAT
    CTTGAAGAATATGATATTTTACATCAACGTTCTTTATTCAATGAAGCACGTATTGCCGTT
    ACTTTAATTCGTGGGAATCATTACTTTAAAGCGAGTAAAACAATGAATCAACAAGGGGAG
    CCATACAAAGTTTTTACTAGTTTCTATAGAAAATGGCGACCTTACTTGAGGCATAGAGAC
    GTATATCACTATGATTTAAAATCATTCGAAGACTTTGTCATTGCATCACCTGATGATTTA
    GTGTTTGATGACATAGCGTTTGGATCCTCACAAGTAATTGAACAGAATAAATGGCAACAT
    TTTTTAGATCAAGATATACAGAATTACGAAAGCGGAAGAGACTATTTACCTGAAGTGTTA
    ACAAGTCAGCTAAGTGTTGCTTTAGCATATGGATTATTAGATATTATTGAAATTTTTAAT
    GATTTATTGGCGCGTTATGATGAAGATGAGGCAAACCATGAAGCATTTATACGTGAACTC
    ATTTTTAGAGAATTTTATTATGTGTTAATGACACAGTATCCAGAAACCTCATACCAAGCT
    TTCAAACCTAAATATCGACAGATAAAATGGTCGCAAAATGAAGCGAATTTTAATGCATGG
    TGCGAAGGGCAAACAGGATTTCCAATCATTGATGCAGCAATAATGGAATTGACACAAACT
    GGTTTTATGCATAATCGAATGAGAATGGTTGTGTCGCAATTTTTAACCAAAGATTTATTT
    ATAGATTGGACATGGGGAGAAAAATTCTTTAGAAAGCACCTTATTGACTATGATGCAGCA
    TCAAATATTCATGGATGGCAATGGTCTGCTTCTACAGGTACGGATGCAGTGCCGTATTTT
    AGAATGTTTAATCCAATAAGACAGAGTGAACGCTTTGATGCTAAAGCTTTGTATATCAAA
    ACATATCTTCCGATTTTTAATCAAATTGATGCAAAATATTTGCATGATACACAACGCAAT
    GAGTCCAACCTTTTTGAACAGGGGATTGAATTAGGTAGTCATTATCCAAGACAAATGGTA
    GATCATCAAGAAAAACGTACACAAGTTTTAGCTACATTTAAAGCGCTAGACTAA
    60
    120
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    1140
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    1320
    1374

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA_RS03690 [old locus tag: SA0646 ]
  • symbol: SA_RS03690
  • description: deoxyribodipyrimidine photo-lyase
  • length: 457
  • theoretical pI: 5.12816
  • theoretical MW: 54383
  • GRAVY: -0.444639

Function[edit source | edit]

  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairdeoxyribodipyrimidine photo-lyase, 8-HDF type (TIGR03556; EC 4.1.99.3; HMM-score: 248.9)
    and 4 more
    Cellular processesCellular processesAdaptations to atypical conditionscryptochrome, DASH family (TIGR02765; HMM-score: 149.9)
    cryptochrome, plant family (TIGR02766; HMM-score: 148.8)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairdeoxyribodipyrimidine photolyase (TIGR00591; EC 4.1.99.3; HMM-score: 17.2)
    Unknown functionEnzymes of unknown specificityputative phosphoesterase (TIGR00024; EC 3.1.-.-; HMM-score: 17.1)
  • TheSEED:
  • PFAM:
    no clan definedFAD_binding_7; FAD binding domain of DNA photolyase (PF03441; HMM-score: 250.4)
    and 3 more
    HUP (CL0039) DNA_photolyase; DNA photolyase (PF00875; HMM-score: 44.8)
    Calcineurin (CL0163) Metallophos; Calcineurin-like phosphoesterase (PF00149; HMM-score: 17.6)
    no clan definedPHINT_rpt; Phage-integrase repeat unit (PF14882; HMM-score: 8.6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.122
    • Ymax_pos: 11
    • Cmax: 0.13
    • Cmax_pos: 32
    • Smax: 0.242
    • Smax_pos: 2
    • Smean: 0.141
    • D: 0.129
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446874782 NCBI
  • RefSeq: WP_000952038 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFYQSLHAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASPDDLVFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFNDLLARYDEDEANHEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SA_RS03690 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]