From AureoWiki
Jump to: navigation, search

NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03955 [old locus tag: SA0694 ]
  • pan locus tag?: SAUPAN002644000
  • symbol: SA_RS03955
  • pan gene symbol?: —
  • synonym:
  • product: GrpB family protein

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS03955 [old locus tag: SA0694 ]
  • symbol: SA_RS03955
  • product: GrpB family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 792558..793076
  • length: 519
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_002745 (792558..793076) NCBI
  • BioCyc: G1G21-783 BioCyc
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGTATTCAAATGTTCAACCATTCATTAATAGTGATTTAACTAATTGTTTTCAATCACAA
    TACACTGAAATTGAATCATTATTATTCAACCTCTTAGACAGCCCAGTAAAATATACAAAA
    CATATTGGCGGTACGCATCATTTTAAATATTCAACAGAGCCAATTTTAGATATTTTAGTA
    GGTGTAGAAAATTTGCATGATATTACATCCTTAGATGAAAAACGCTTAAATTATGTAGGG
    TTTTATCGTTTGCATCATAAATATACTAAGAAAGTTATGATGGCGAAGTTTAACAATTTT
    CATGAACTAAAACAACAGGTGCGTCTACATATCATTCAAATGAATACCCAAACATTTGAA
    TCTTATCTTGCACTTGATTACCTCTTATCAACTAATGATGATATTGCTTTGCAATTCAAT
    ACAAAAAAGCACCAAATATTGCAACATAGCTTAACAATTAGACAATATGAGATGCAAAAG
    CAACAATACTTTGAAAAACTATGTAAAAAATACTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    519

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SA_RS03955 [old locus tag: SA0694 ]
  • symbol: SA_RS03955
  • description: GrpB family protein
  • length: 172
  • theoretical pI: 8.60072
  • theoretical MW: 20605.5
  • GRAVY: -0.485465

⊟Function[edit source | edit]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    NTP_transf (CL0260) GrpB; GrpB protein (PF04229; HMM-score: 75.5)
    and 2 more
    no clan definedT4_Gp59_C; T4 gene Gp59 loader of gp41 DNA helicase C-term (PF08994; HMM-score: 15.1)
    DUF4517; Domain of unknown function (DUF4517) (PF15006; HMM-score: 14.4)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.106
    • Ymax_pos: 45
    • Cmax: 0.119
    • Cmax_pos: 20
    • Smax: 0.143
    • Smax_pos: 42
    • Smean: 0.095
    • D: 0.102
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 446209352 NCBI
  • RefSeq: WP_000287207 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MYSNVQPFINSDLTNCFQSQYTEIESLLFNLLDSPVKYTKHIGGTHHFKYSTEPILDILVGVENLHDITSLDEKRLNYVGFYRLHHKYTKKVMMAKFNNFHELKQQVRLHIIQMNTQTFESYLALDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKYL

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SA_RS03955 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

Retrieved from "https://aureowiki.med.uni-greifswald.de/index.php?title=SA_RS03955&oldid=102215"